Detailed information on TCONS_00218727

lncRNA-RNA interactions

Number of interactions: 55

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257287 centrosomal protein 135kDa protein coding TCONS_00218727 645 301 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding TCONS_00218727 619 294 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding TCONS_00218727 550 292 UTR5 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00218727 585 284 noncoding Trans
ENST00000498813 delta(4)-desaturase, sphingolipid 1 processed transcript TCONS_00218727 608 298 noncoding Trans
ENST00000506202 centrosomal protein 135kDa retained intron TCONS_00218727 645 301 noncoding Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00218727 618 303 UTR3 Trans
TCONS_00010841 epoxide hydrolase 1, microsomal (xenobiotic) novel protein coding TCONS_00218727 564 300 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding TCONS_00218727 610 297 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding TCONS_00218727 608 295 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding TCONS_00218727 608 295 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding TCONS_00218727 608 295 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding TCONS_00218727 608 295 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00218727 603 279 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00218727 626 298 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00218727 682 396 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00218727 626 298 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding TCONS_00218727 562 311 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00218727 618 303 UTR3 Trans
TCONS_00053503 anoctamin 4 novel protein coding TCONS_00218727 619 300 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding TCONS_00218727 619 300 UTR5 Trans
TCONS_00085508 neuregulin 4 novel noncoding TCONS_00218727 606 300 noncoding Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding TCONS_00218727 670 380 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding TCONS_00218727 670 380 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding TCONS_00218727 670 380 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00218727 633 386 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00218727 540 349 UTR3 Trans
TCONS_00103554 tubulin, gamma 2 novel protein coding TCONS_00218727 603 398 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00218727 645 304 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00218727 669 401 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00218727 615 296 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00218727 632 296 UTR3 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00218727 605 320 UTR3 Trans
TCONS_00147113 ATPase family, AAA domain containing 2B novel protein coding TCONS_00218727 605 320 UTR5 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding TCONS_00218727 601 295 UTR5 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding TCONS_00218727 559 288 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding TCONS_00218727 559 288 UTR3 Trans
TCONS_00167295 BH3 interacting domain death agonist novel protein coding TCONS_00218727 531 320 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00218727 602 296 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00218727 610 296 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00218727 610 296 UTR3 Trans
TCONS_00190499 palladin, cytoskeletal associated protein novel protein coding TCONS_00218727 646 326 UTR3 Trans
TCONS_00190504 palladin, cytoskeletal associated protein novel protein coding TCONS_00218727 646 326 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00218727 522 262 UTR3 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00218727 608 310 UTR5 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding TCONS_00218727 624 297 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00218727 624 297 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00218727 623 296 UTR5 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding TCONS_00218727 601 310 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00218727 623 300 UTR5 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00218727 616 298 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00218727 623 300 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00218727 616 298 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00218727 621 289 UTR3 Trans
TCONS_00251977 G protein-coupled receptor 82 novel protein coding TCONS_00218727 575 281 UTR3 Trans

Sequence

>TCONS_00251977 (4165 nt)
CTCCTCTGCCGCGGGCTCTGTAGCTGAGTGGTGGCTGGGTATGGAGGCGAAGGCGGCACCCAAGCCAGCTGCAAGCGGCGCGTGCTCGGTGTCGGCAGAG
GAGACCGAAAAGTGGATGGAGGAGGCGATGCACATGATACTATGCTATGCACAGTGTTTTCATGTGGGCCATGTTATAAGCCCCACAGAAGCCCTATCAG
GAAATATTTCTTTAAGGACTCATCAAACTGTGTGCAAACAAGGTCTGTTTCCATCTCTCCCCCTTTTATCATGACATCACTAGAAAGCAGTTTATAGTAG
TAATGTCTTTGGAGAAAATAATAAACTACGAAGTCTCTTCCATCTAGGTGCTTTCATTATCTGTATCTGGGCAGGCCCTGACTAGAGAAAAAAAAGAAAT
TATATTCAAGGACAAAATAGAGACCAGTGTTTGGGCTGGGAAGAACAGAGATTTTATTCTTTAATTTTGAAGGTTGATCATTTGTTACTTTATGAAAAAC
CTTGTAGCCATTTTTAAATAGTATCTGATCTTGGTCTTTCCCCCTAAAAAAGGCAAGAAAGGTTAAATTCAAAGCTACCTGCACAAATTTCAGACCCATT
TTGCCTGAGCTTTTTTGCATTTGTGAAGAAGTGATCAGACTTGACAGTAGAGTTGTTGGGAGAGTTTGAAAGTATGATATGGGTATGGGGTGAAATTGAT
TTCCAGCTTAATTAAATCTATTGTGAACTTGTTAGTGAAGCAAATCTACATGTTAATTGTTGTAAAGGAGTTCCCCTCAACTCACTTCCATGGGGCTTTG
TGTTATTCTCACCGCCCCCTCCCCTGCCTACCATTCCAGTTGCTTACCCACTCATCCTCAGCATGGCAGGCTCGGCCATTCCTCAACAATGACGTTATTT
GTCCTTTTAAAATATTCCGATCGCTCATATTTGCTCTCTGTTTCGGACAGCAGTGGAAGGCATTTCAGGAAAAAAAACTGTGTTACTCAAAATAAACATG
AAGATAATATTGAGAGGAGTGAAATGAAATAAATTTGCTAGACGGAAAAAGAGAAAAATCCAAAGGAAGGAATGGAAGGCACAAACCCAGTAACATGGTG
GCGTGGGTGCTATCTCCAGGTGAACAAGACAGAACTTGCAGGCAACATGGAATCTCATCTCCCATCCCACTCACGTCCTTTCCACTCGGCCCTGCATTCT
CTTCTGCAGGTTTGAGATGGCCCACATAGCCAATGTAGAGCTCTTCAGGAGATATTTTTACAGAAAATCCTGATCACATGGCCTCCATTTGTTTATTCTC
TTGCCGTTTTTGTTTTTTTTTTTAACTTTTTTTTTTTTTAAGACAGAGTTTCACTTTGTCGCCCAGGCTGGAATGCAATGGCACAATCTGGGCTCACTGC
AACCTCCGCCTCCTGGGTTCAAGCGATTCTCATGCCTCAGCCTCCCAAGTAGCTAGGATTACAGGCACCCATCACCATGCCCAGCTAATTTTTGTATTTT
TAGTAGAGATGGGGTTTCACAATATTGGCCAGGCTGGTCTCAAACTCCTGACCTAAGATGATCCACCTGCCTTGGCCTCCTAAAGTGCTGGGATTACAGG
CATGGGCCACTGTGCTCAGCCTATTTTTTACTTTTTTTAGAGATGGGGTCTTGCTGTGTTACCCAGGCTGGAGTGTAGTGGCATGATCATAGCTCACTAC
AGCCTTGAACTCCTCTTGCCATTTTTTTTATCCTTAAAATTTCCATGTCTCACTCTCTTGCCAACTGTTCTCTCTCATTTGGTCCCTTGATTCACTCTAA
ACTCAAACCCTGATAAAGCAGCTGATCGGTGAAGTGTCTGTTGTTACTAAAGTAGAAGTTAGAGGCAGAACAGTGGCAGAGAGCCCTGGAATCTGGCCCT
TGGTAGGTGCTCCACAAATGTTTGTTGAACAAATGAATAAGTGGAGCCAGGTTGTCTATGCCCTAGTCCCAGCTCTCTCACATGCGCTAGTGAGAGATAT
ATACATGTATAAAAAAAAATCTCCCTGTGCCTCAGTTTCCTCATCTGTAAAATGGGGAAGATCATTATAGGCTTGTAAATGAAATGAATTAATACTTATA
AAATGCTTAAATTAGTCCTGGATCAAAGTAAGCTTTCAATAAATTGTAAGCTCTTATGTTCAAGCTCTCAGAACCAGAATACTCGAGATGCAGACAAAAC
ATTACCTCTCTTAAGAGGTTTGTTGGGGAAAGTATAGCTGGAGTTAAAAATTTAACCTCTTAGATAAGTCACTGTTCAAGCTACTGGTTTTCATCTCCAC
CATTCCACCTAAATTGCCACCACCTTGCTGAATTAGACACACTTGACCACCCTTCCTTCTTGGCCTAGTGTTTTTCTGGGATTGTCCGTAACACCAAATA
TTTCTCTAAACTCACTAAACATCTCTTTTTAATTCCCATTGCAAAATCCTTTTTGTTTACCTGTACTTATTTTTTAACTTTCATTTTGAAATAATTATAA
GTTCACAAGAAATTACAATAATAATATACTGGGAGGACCCAAGTGTCTAGTGTCCTTCAGTGGTAACATCTTGCATAGCTATAGTTCAGTATCAAAACCA
GGAAAAATGCATTGGGAAAACTGCAGAGCTTATTAAGATGTCATCAGTTTTATTTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCGTG
CCTATGCAATTTTGTCATGTTTAGCTTTGTATAACCACCACTGGAACTGTTTCACTACCACATGGCTCCCTTGTGCTACCTCTTTATAGCTGCAGCTTCT
AATCTGTTCTCTGTCTATAATTTTATAATTCAAAAATGCTATGTACATGAATCTGTAACCATTTGGCTTGGCTTTCTCCATTCAGCATGATTCCCATGAG
ATCCATCCAAGTTGTTGAGATTATCGATAGTTCATTCCTTGTTATTGCTGCATTGTGTCCCATGGTACAGGTGTACCATAGTTTGTTTAGCAGTTCACCC
ACTGAAGGGCATTTGAGTTGTTTCCAGTTTTTGGCTATTACAAATAAAGCTGTTATGAATATTTGTGCACACAGACATACATTGTGTGAGCATAGGTTTT
CATTTCTCTGGGATAAATGCCCAAGAGTGGAATTGTTGGGTCATAAGTTAAATGCATGTTTAGCTTTTTAAGAAACTGCCAAACTATTTTCCAGTGTGGC
TGTACCATTTTATATTCCGACCAGCAGTATATGAGTAATATCACTTCTCCACAGCCTTGCCAGCATTTGATGTTGTTTTTACGTTTCACTTTAGTCATGC
TGATGGGTGTGTAGTGATACCTCATTGTGGTTTTAGTTGACATTTCTCTACCGGCTAATGATGTGAAAACATCTTTTCGTGTACTTATTTGCTATGTGTG
TTATCTTCTTTGGTGAAATGTCTGTCTTTTGCCTTCTCATATAGTTTGGATATTTGTCGCCTCCAAATTTCATGTTGAAATTGAATCCCTGGTATTAGTA
GCAGGGCCTGGTGGGAAGTTTGGATCATGGGGAGGATACCTCATAAATCATTTTTATAGTGGCAAGTTCTCACTATATTATTATCATGAGAATATACCAT
CCCCTCCTTTCTTTCTTCTTCTCTTACCATGTGATGCCTGCTCCCATTGCCTTCTGCCATGAGTGGAAGCTTCCTGAGGCCCTCACTGGAAGCAGATGCT
GATACCATACTTCTTGTACAGTCTGGAGAACTGTGAGCCAAATCAACTTCTTCTCTTTATAAACTACCCAGCCTCAGGTATTCCTTTATCGCAGCACAAA
TAGATGAAAACAGTCTTTTTCTAATGGGATTATTATTTTATTGTGGAGTTTTAAGAGTCCTTTATATAGTCTAGATACTAGAGTGTTGCCAGAGATGTGG
TTTGTAAGTTTTTTCCTATTTTAGCATGTTTTTCTTCCTCTTTGCTGCATGTATTAGTTTCCTATGGCTGCTGTAACAAATTATCACAAACATGGTGGCT
AAAAACAACACAAGTTTATTCTCTTATAGTTCTGGAGGCCAGAAGTCTGAAATTTTAGTGAGCCCCAATCAAAGTTTTGGCAGGGCCGAATAACTTCTGG
AAGCCTGCCTTTTCCAGGTACTGAAGTGACATTTATGACCCATCCCTCCATCTTCAAAGCCAGCAG

Expression



Full and truncated open reading frames discovered in TCONS_00251977

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.