Detailed information on TCONS_00220702

lncRNA-RNA interactions

Number of interactions: 50

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000467462 inter-alpha-trypsin inhibitor heavy chain family, member 4 processed transcript TCONS_00220702 579 295 noncoding Trans
ENST00000470361 potassium large conductance calcium-activated channel, subfamily M, beta member 2 processed transcript TCONS_00220702 556 299 noncoding Trans
ENST00000475187 THO complex 5 retained intron TCONS_00220702 583 301 noncoding Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding TCONS_00220702 607 255 UTR3 Trans
ENST00000604000 Lix1 homolog (chicken) like protein coding TCONS_00220702 655 296 UTR3 Trans
TCONS_00001594 lincRNA novel protein coding TCONS_00220702 625 291 UTR5 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding TCONS_00220702 615 251 UTR3 Trans
TCONS_00025805 zinc finger, MIZ-type containing 1 novel protein coding TCONS_00220702 624 295 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding TCONS_00220702 669 297 UTR5 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding TCONS_00220702 624 259 UTR5 Trans
TCONS_00056597 C-type lectin domain family 7, member A novel protein coding TCONS_00220702 627 303 UTR3 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding TCONS_00220702 620 303 UTR5 Trans
TCONS_00070307 pecanex homolog (Drosophila) novel protein coding TCONS_00220702 606 296 UTR5 Trans
TCONS_00082423 transcribed_processed_pseudogene novel protein coding TCONS_00220702 688 295 UTR3 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00220702 610 284 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00220702 504 284 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding TCONS_00220702 605 298 UTR3 Trans
TCONS_00116334 low density lipoprotein receptor class A domain containing 4 novel protein coding TCONS_00220702 622 302 UTR3 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding TCONS_00220702 625 241 UTR5 Trans
TCONS_00135631 zinc finger protein 841 novel protein coding TCONS_00220702 501 298 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00220702 645 299 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00220702 645 299 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00220702 645 299 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00220702 645 299 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00220702 645 299 UTR3 Trans
TCONS_00150689 ectodysplasin A receptor novel protein coding TCONS_00220702 631 297 UTR3 Trans
TCONS_00163348 runt-related transcription factor 1 novel protein coding TCONS_00220702 686 294 UTR3 Trans
TCONS_00163350 runt-related transcription factor 1 novel protein coding TCONS_00220702 686 294 UTR3 Trans
TCONS_00163352 runt-related transcription factor 1 novel protein coding TCONS_00220702 686 294 UTR3 Trans
TCONS_00168418 dual specificity phosphatase 18 novel protein coding TCONS_00220702 678 287 UTR5 Trans
TCONS_00173724 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00220702 656 296 UTR5 Trans
TCONS_00173729 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00220702 656 296 UTR5 Trans
TCONS_00173730 cms1 ribosomal small subunit homolog (yeast) novel protein coding TCONS_00220702 656 296 UTR5 Trans
TCONS_00175515 transient receptor potential cation channel, subfamily C, member 1 novel protein coding TCONS_00220702 662 301 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00220702 638 296 UTR5 Trans
TCONS_00196430 trio Rho guanine nucleotide exchange factor novel protein coding TCONS_00220702 627 296 UTR3 Trans
TCONS_00196432 trio Rho guanine nucleotide exchange factor novel protein coding TCONS_00220702 627 296 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00220702 606 294 UTR5 Trans
TCONS_00199451 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 novel protein coding TCONS_00220702 640 290 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00220702 641 302 UTR3 Trans
TCONS_00203984 family with sequence similarity 169, member A novel protein coding TCONS_00220702 601 293 UTR5 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00220702 601 293 UTR5 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00220702 689 296 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00220702 656 299 UTR3 Trans
TCONS_00240045 zinc finger protein 706 novel protein coding TCONS_00220702 677 295 UTR3 Trans
TCONS_00240046 zinc finger protein 706 novel protein coding TCONS_00220702 677 295 UTR5 Trans
TCONS_00243489 proprotein convertase subtilisin/kexin type 5 novel protein coding TCONS_00220702 606 259 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding TCONS_00220702 623 269 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00220702 612 251 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00220702 667 305 UTR5 Trans

Sequence

>TCONS_00252827 (4646 nt)
CTGGGCTCTATGAAAATTGTTAAGCAATTGATCTGCCATAGTACATGAGCTGAAGAAAGTGGTGCTGAGTCCACAAGGTTTCCATGCACATCCCCTCCCC
TGTGTCTGGAACTGCTCCCTAAATGAGAAGAGAGTCCCCCTGAGACCCGCATGCAAGTACTGTGGACAGACTGTTGTTCCTCCAGAGAAGACACATGTTG
ACAGCTTGACGTTCAGGCTGATGATGGATTTCTTTTTTTTTTTTCATTCTAGATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACTTATATCAGT
TACAGCAAGAGGCACCTCGTCCCAAGAGAATCATTTGTCCTCGGGAGGTGGAAAACAGACCAAAATATTATGGAAGAGAGTTTCATGGGATCATCTCTCG
GGAGCAGGCGGATGAGCTTCTTGGAGGCGTGGAGGGTGCCTACATCCTTAGAGAAAGCCAGCGGCAACCAGGATGCTACACGCTGGCTCTCAGGTTTGGA
AACCAGACCTTAAACTACAGGCTCTTCCACGACGGGAAACACTTTGTGGGTGAGAAGAGGTTTGAGTCGATTCATGATCTGGTGACAGATGGCTTGATAA
CACTGTACATAGAAACAAAAGCTGCCGAGTACATTTCAAAAATGACAACTAACCCCATCTATGAACACATTGGATATGCCACCCTACTCAGAGAAAAAGT
ATCCAGAAGGCTGAGCAGGTCTAAAAATGAACCAAGAAAAACAAACGTCACACATGAAGAACACACAGCGGTGGAAAAGGTGAGCTGTGTGTGATGGAAG
CAGCCTTTCGTTTTAATCCATGCCGCATCAACAGGCGGGTTAACTATAGGTGCGATTTGCTGAAATGTTGGAGGAGACCCACCCCCACCCGAAGAACTCT
AGAATGTTAGGGCCAAAGGGACCTTAGAAATCTTCTAGCTCAGGCCGGGCGTGGTGGCTCATGCCTGTAATCTCTTTGGGAGGCCGAGGCAGGTGGATCA
CGAGGTCAGGAGATAGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACAAAAAATACAAAAAATCAGCCGGGTGTGGTGGTGGGCGCCTGTAGT
CCCAGTTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCCAGGACGGGGAGCTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGTCTGGGCAAC
AGAGCGAGACTCCGTCTCAAAAAAAAAAAAAATCTTCTAGGTCAGCCCCCTCATTTTACAGATGAAGCCCAGAAATGTTTGATGATTTGTTCAAATTCAT
ACAGTCAGACCCAGGACTTCTACCAAGTCATTTGTGGGTTTATTTGGAGTTTGAAAGAAAAAAAAAACAAACCTCCATTAATGTATTATGATGAAACATG
TTTTCAGTCACCATTTGAGGTGTCACTGGCTCCATCTTTAGTTCCACCCAGCCGGCCAAATACGTGGTATTTGTATTTGCTTCTCTTAGGACTGGGTGAC
TGCCCATGATCCACAGGTCAGGTCTCTTGAAGGTGGTCTTACTTAGATAACAGGTTTCACTGACAGATATGGGAGCATTTCACTGACAGATATGGGAACG
TGGCTATCTCTGGGAAGTAGAAAGACAAGCTGTCCTTTGCCCCAAAGTTATTATGCCTCACCAAGGATTAAAAAACTCCTAAGTGGGCAAGTATGCAGGC
GGGGGGTAGATTGTGGCAGGAGGCGGCCAGGGAGATCTGATTTTCCTCTCCAGTAAGTTGCTGTTTGTTTGAAAGGCACCACCAGAGTTTGCTAGCAGAT
TTTTGGGATGTGCCCCTTGAGGGACCATCTGCTTTGCCTGGTCCTATCTGTTTCCCACTGAAAGAAAGTGACAGCCAGCCACGCCAATCAGCCCCTGCAG
AGTCTGTGCTGAGCCCGGCTTGTCAGGCACACTAGGGCTGGGACAGATAGAAATAAGCGGATAGGAGCTACAGCCCCGCCACACTGCTCCTTCCAGTGGT
CACTAATCCTAGTTAAACCGGAACGGGCCTCCCGTCGTCCAGTGTCAATGGGAAGCAAAGGAGCCTCGGGCTGATGGATTCGGGACTGGCATTGGCAGAG
GGGCTTCATCAGAAAGCCCTGAGAGGGAGGAGGGCGGGGTGGCACCGTGGTCCCGTTGGTGGAGACAGGGATCATGTCAACTGATTTGCTGATTGAGCTT
CAGATCCTAGGAGAACCTTCCACAGAATCACATCAGTGCAGCAGCTGGGCCCATGAAAATATAATTTGCCATTTTCTTTTTATAACTCCAGTGTCTCCAA
AGCACCTGTTTATTCTTTTCCAAATAATTGCTTTGGGAAATTGTGGGGTTTCTGACTGTTTACATTTTAACAAAAGAGAGAGGACTTGAGTCCCAACTTT
CAGAGTTTGTTCCGGTCCAGACAAAAGCCATTCCTTAGTCTGTTTGCAAAATCTGTTCCAAAGTAATTTAGAATAGAAAATATGAAAGCCGACCTTCCCA
GCCATGACAAATCAGAAGATGAATTGTAAAATAAATCTCTGAAGCAGTGTTTATATTTCTGAATCAGAGAGCAAAGTCACTGAAAAGGCAATCTGTTACA
AACTGCAGGATGCACACTAGAACAGCTCAAGGAAAAGAGGAGAGCAGGAGGAGTGTCTCTTCTGTGTTAGGGCCGACTTGAGATCCTGGGTATTGAAACT
GATATTTCTAGATTCTTGTCCTTCCCTGAGAGGGAAGTTTGGTCAACAGAAACTGATATTTCTGGACAATATTCCTATCAGGAAACTTGTACCTCAAAAT
ATGCCCCCTTGTGCAGATATTTTTGTATTTATTTGTCAAAAATAAATTGTGGAGGAAATTAATAATCCAATTAATAATCACTTTGAATGAGCCACCCAAT
ATACATTTACCTTTTTGGGAAACGGTAAATCAAGAAAATATTGCAGGAAGACACCCCAACTCTCTGAGCAGTTTGATGGACGGGTGTCGGTGGTGTGGAT
TTTCTTGGACACTAATGATGTGATGTTTGGTTGTCCCAAGGGACACTGGGCCTGGTCACTTGCTGGGGCTACTCATTTTGTTAGTAGTTTGTTAAGTTAC
TTGGTACGAATCCATCCGTTTCTCTCTGACCTATATTGACAAGTGGAATTATTAAAGGTCTCAGCCTTGCCAGAGATTCTGTTTCCCTTAAAGGCAGTCA
GTGGTCCATTGCGATGGAGTCAGTGACTAGAAAAGAGGGACTGGAAACGTGAATGGCTTCACTGAGAAGAGTGGGTGGGGGGAGGGTACCTGTTTGCTTT
GCTAAGGGCGTGTCTTGAAGGTTTTAATGAGTGAAATGAGCAGGTTTCCTAATATTTCTCAATTCCAGACACACCAGCATTTCCGTTTCCAGGTACTTAA
ATTTCGTTTTCTCATTTGTTTTATTGATCGTTTCCAAATGAATCCAGAGAGACGATGTTACCTGTGTATCCAAGAATACTAACGCAGTAATAATTGGCAA
AAAGAGATTACCTACTCCATCAGATTTGAGTGGCTCCCAGATTTCTCTCCAGTCATGATTGTTAGCAGTAAACTTGATTTTAATAACCGTAGATGAGATG
GAGAGGCAGGGAGGAAGGCAGAAAAAAAAAAAAAGTTGTGATGGTTAGCCAATAGTGATCCGTCTCCCCACTGATTCTTTATTTAGTTGGATTTAAAAAC
ATTATGATGTATGTGGGCCACCATTCGGTGCATCTAATTAAAATGGTCACATCCAGTGTCATTTCTTCTATGAAACGCATTTCAGAACTTATTCCATAGA
TGGATTATCTACTGACCTTCACATCACTGTAAGCAACAAAGGAATAACAGGAGATTTAACATGAGCTCAGACATTTAGTGTTAAACACATTTCACATATG
TGAACTAATTTCCCATTTTATCCTCAGAACCACTTTGCCAGGTCCGTAGGGCAGGAATCACCATCCCCATCTTATTGAAAGGCTCACGGTGGCAGGGTGA
GGAATCAGACCCAGGCTTCCTGATTCCACGCTCAAAGCTTCTTAAATCAACTGAGCAGTTGTGCCTCATTCTGTGCTCACTGCCCTTAGTGCTTTGAGCG
AACACCCTTGGTTTTGGGCCATCCTGAGGCAAGTGATGCTAAAAGTACTCAGTATTTACATGATCTGTTTCTGAAAACAGATCATGTAAGCAGAAAACTG
CTATTACGAGCTATAATAACTAGTATTTTCTTAAAAAGTATACCCTACGAATCCAATGCATATGACAACAGTGTTTTTGACAGCACATTTTTATTCAATA
AATATGGTTTGTCATATTAAATTGCATCTGTGTTTTAGTGGGGAAAAAATGATCCATGCCCTTAAATAATAAAAGCACATTTAAGAATATATTATACCAG
TTTATCCGTTTCACTGTTCATTATAGCAGCAAAAATTAGAAAATGACCTTAATGTCCATCAATTTGAGACTGCTTAAATGGATTATGGTACATCCATGTT
AAGGAATATCACACAACCCCAGGAAAGGAATGAATGAGAACCCTCATATGGGCTGATGTGGAATGGGCACTTGGAATCGTTATATGGAAAAGTACCTAGC
AGTGTGGTGTGTGGAGTATGGTATTATTTGAGTAAACTAGTAGAAAA

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.