| Potential function | Interacting transcript | Gene description | Transcript biotype | lncRNA id | Alignment score (LAST) | Alignment length | Transcript region involved in interaction | Genomic orientation of interacting RNAs |
|---|---|---|---|---|---|---|---|---|
| ENST00000324537 | SH3-domain GRB2-like 3 | protein coding | TCONS_00221109 | 545 | 293 | UTR5 | Trans | |
| ENST00000338758 | parvin, beta | protein coding | TCONS_00221109 | 684 | 319 | UTR3 | Trans | |
| ENST00000381431 | sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) | protein coding | TCONS_00221109 | 608 | 292 | UTR3 | Trans | |
| ENST00000423516 | transketolase | protein coding | TCONS_00221109 | 516 | 289 | CDS | Trans | |
| ENST00000472528 | transketolase | nonsense mediated decay | TCONS_00221109 | 516 | 289 | UTR3 | Trans | |
| ENST00000475187 | THO complex 5 | retained intron | TCONS_00221109 | 533 | 297 | noncoding | Trans | |
| ENST00000511184 | E74-like factor 2 (ets domain transcription factor) | nonsense mediated decay | TCONS_00221109 | 615 | 296 | CDS_UTR | Trans | |
| ENST00000550527 | apoptotic peptidase activating factor 1 | protein coding | TCONS_00221109 | 633 | 290 | UTR3 | Trans | |
| ENST00000593250 | centrosomal protein 76kDa | nonsense mediated decay | TCONS_00221109 | 548 | 295 | UTR3 | Trans | |
| TCONS_00030130 | calcium/calmodulin-dependent protein kinase II gamma | novel protein coding | TCONS_00221109 | 620 | 285 | UTR3 | Trans | |
| TCONS_00050195 | FYVE, RhoGEF and PH domain containing 4 | novel protein coding | TCONS_00221109 | 606 | 290 | UTR5 | Trans | |
| TCONS_00053421 | apoptotic peptidase activating factor 1 | novel protein coding | TCONS_00221109 | 633 | 290 | UTR3 | Trans | |
| TCONS_00053851 | transmembrane protein 263 | novel protein coding | TCONS_00221109 | 659 | 282 | UTR3 | Trans | |
| TCONS_00061878 | transmembrane protein 116 | novel protein coding | TCONS_00221109 | 631 | 308 | UTR3 | Trans | |
| TCONS_00075813 | forkhead box N3 | novel protein coding | TCONS_00221109 | 641 | 291 | UTR5 | Trans | |
| TCONS_00075827 | forkhead box N3 | novel protein coding | TCONS_00221109 | 641 | 291 | UTR3 | Trans | |
| TCONS_00119512 | zinc finger and BTB domain containing 7C | novel protein coding | TCONS_00221109 | 571 | 279 | UTR3 | Trans | |
| TCONS_00123889 | ribosomal protein SA pseudogene 58 | novel protein coding | TCONS_00221109 | 605 | 285 | UTR5 | Trans | |
| TCONS_00123899 | ribosomal protein SA pseudogene 58 | novel protein coding | TCONS_00221109 | 605 | 285 | UTR5 | Trans | |
| TCONS_00168219 | THO complex 5 | novel protein coding | TCONS_00221109 | 520 | 271 | UTR3 | Trans | |
| TCONS_00168220 | THO complex 5 | novel protein coding | TCONS_00221109 | 520 | 271 | UTR3 | Trans | |
| TCONS_00173724 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00221109 | 615 | 291 | UTR5 | Trans | |
| TCONS_00173729 | cms1 ribosomal small subunit homolog (yeast) | novel protein coding | TCONS_00221109 | 615 | 291 | UTR5 | Trans | |
| TCONS_00180672 | transketolase | novel protein coding | TCONS_00221109 | 516 | 289 | UTR5 | Trans | |
| TCONS_00180673 | transketolase | novel protein coding | TCONS_00221109 | 516 | 289 | UTR5 | Trans | |
| TCONS_00185516 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00221109 | 622 | 291 | UTR3 | Trans | |
| TCONS_00185519 | transcribed_unprocessed_pseudogene | novel protein coding | TCONS_00221109 | 622 | 291 | UTR3 | Trans | |
| TCONS_00194682 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00221109 | 615 | 296 | UTR3 | Trans | |
| TCONS_00194686 | E74-like factor 2 (ets domain transcription factor) | novel protein coding | TCONS_00221109 | 615 | 296 | UTR3 | Trans | |
| TCONS_00202828 | myotubularin related protein 12 | novel protein coding | TCONS_00221109 | 657 | 291 | UTR3 | Trans | |
| TCONS_00203663 | ribosomal protein L3 pseudogene 6 | novel protein coding | TCONS_00221109 | 549 | 292 | UTR3 | Trans | |
| TCONS_00222403 | protein tyrosine phosphatase, non-receptor type 12 | novel protein coding | TCONS_00221109 | 641 | 291 | UTR5 | Trans | |
| TCONS_00249092 | transmembrane protein 245 | novel protein coding | TCONS_00221109 | 603 | 280 | UTR5 | Trans |
>TCONS_00249092 (3276 nt)
TTTTTTACAGACAATAATTTATAAATCATTATCTGAGACTACATCTTCCTGTTTTACAGACCTTTAGACTTAGAGACCTAAGAGTATTTATATTTCAAAT
TTGGTTCTCATTAATTTTGAATATATGATCATCTATTATAGATGACGACAACTAAATTGATGTTTATCTTTGTGCTATCTTGTTAAAGACATTCCTAAAC
AAATTGTTGGTTTAATTATGATTACACAGGGAATGTTTCAGTTACTCTTAAAAATAAGCATGCTCAAACACAGAACAAGTACCTGTTGTAGACAAAGAAT
TGATTTACTAGTTATAATCCACTTGTGTATTTTACTAGAGTAAGTTTTCTTACAGGTTTGTAAGACATCTCTGACATAGTTTCATTTATTTATAAGAAAT
GATACATTTCATATTTTTCATTACCTATGCTGGATTGTGATTCAGGCAAAATTAATGAAGTTTCAATGTGGAAAGAAATGTCTTCCCACTCAGCATGGGC
TGAGGATATCCTAAACATTTCATAGACAATGGCCATCTCTACCCTTAGTGTGAGAAGAGAGCCAATTTTGTTTGTTGGAAACTGTGCAGAGGGCCCTTTG
GGGAGAGTGAATATTACTCGTGTATTTAATTAGTACATAAAAAATAAATGACCATACTCAGATCCACAATGAAACTGTGAAAATAAAAACATTTCAGATT
TTCAGTACTAATTAGCCCTTTTCACCTTGTGTGTTAAATACTTTTAAATAATTCAAAATATACTGGGAAAGAATAACCACAGAATTAATATTAGGAACAT
TGGAGGGCATTTTGTAAGCATCAGTCTAAATAGTTAATAAGGAGAATATGCAGAAGGGGAAGAAACAATAAATAGGAAAATGTTTGTGTACCACAACAGA
CACATATCATTATTATTATTATTATATGAAATTTGCAACACCCACTACCAAAGAGAAACATGGGAAACAAAATAAGTTTATTGTACAATTGTACAAATTA
CAGTCTCATAGAAATAAGAAATAAGACTTATGTTTTCCAAGTAGGAAAACAAATAATCATTTAAAAAAATAACAAAAAATATGTTCTTCCAAGAAGAAAT
AATAAGCATTTTTTTAAAGTCTGACAGTGTTTTCCTGACTCATTTTGCATGGTTCATGGAGTCTTACCTATTACTGTCATACTAAAAGCTTAACATCTAA
ACAAATTAAATTAAGGTAAATTTGGTATCATACCAACACCCAGATGATAAAACCTTTAAGTGAAAAGTTAAATTACCTTTTGCATTCTTGTTTATTTCTG
AAAATGTAGAAACTCTTCCTCTTCATTTATTTGTTCATTTAACAAATATTTATTGAGCATGTTAATTTACTAGACTCTGGACACACAATGCAAAGAAAAC
AGATAAGATTCCTGCCCTCACAGAACTTAAAATTGTTCTTGAACACCTGTTTTTATCCAACTTATAAAGTGGATCTTTATACTCAAAGATTTCACACAGC
TGTTAGAATGTTTCATTTTTGGAATATTGCAGGGCCTCTTTCTTGTGGGTAACATACATGCAAGTTGCACAATTCTGTAAAGTCAGGTGCAGTGAGAACA
GACACATTGCATTTAACATTTTCTTGTCTACATGAGACTATTTTGGTTCATGTTCAGTGAAAATGCCTCACCTTGCTTTTAGATCTGTTTGACAGAATTT
GTTTTTTGAGGTTGTGAGCACTTTGAGTTTCCTTGTTTTAGAAACCTGAGGACTGAATTCAAAGCTTGGTTAAACTCAATCAGTCCCTCATTCACTCCCT
CTTGAGGAAATACAAAGATCTCTACCATTATAACATGTACATTCTAGCAGAGAAAGACAGATAAAGAATGGTAGATGTACATGAAAAGGACTCTGGAAGA
AAGGAGGTAAACTGGCCAAAGGGGCGATGGAAAGTAGCAGTCAGGGTGGCAGGATGAAAAAAAGTAGAAGTGAAGCTGGGCGTGGTGGCTCACGCCTGTA
ATCTCAGCTCTTTGGGAGGCCGAGGCGGGCAGATCACGAGGTCAGGAGATAGAGACCATCCCGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACC
AAAATTAGCTGGGCATGGTGGCGCATGCCTGTAATCCCAGCTACTCGGGAGGGTGAGGCAGGAGAATTGCTTGAACCAGGCAGTCAGAGGTTGCAATGAG
CTGAGATCACGCCACTGCACTCCAGCCTAGCAACAGAGAGAGACTCTGTCTCAAAAAAAAAAAGTTGAAGTGAGTCAGTGTAGGCCTCACTGAGCAGAAA
TGTGAAGGACGTGAGGGAATGATGTGAGTAGATTTTAGGAGGAAGAATGTTCCCAGCAGAGAAGAATGGCTGGAGCAAAGTTCCCAAGGAGGAACATGCT
TGGTGAACAGCAAGGAGGCCAGTGTGGGTGGGGCAGACTGAGCCAGAGGGAGCAGTGCAAGAGAGGAAGGCACAGGGTGGCTTGGTGGGAAGAGGAGTGG
ATTATGTAGAACCCCATCGCCTATTGTGAAGAGCAAGGGAAAGCCTCACAGTGTTTTGAGCAGAGGAATGACATGACTGGACTTGTTTTTAAAGGGTGAC
TCCAGCTGCTTTGTTGAGAATACACTGAAGGAAAGCCTGCAGGCAGGGAGAGCTGGTAGTGATATTTCCCTTGACCTCTTTGCAAGACTTGTGAAGGGGT
GGCTCATTTACTCGGCCCGCAGCTCTAAACCCATCACGGGAAGGGGAGTACTCAGGCCCAGCTGTGAGATACAGTAAGTTCAAGATGTCAGAGGCCAGGC
CGCCCCCGCTGCTCGGGCAGCACACAACGCACATCCTGAAGGAGGTCCTGAGATACGATGACAGGGCCATCGGGGAGCTGCTCAGCGCTGGAGTGGTGGA
CCAACATGAAACTCACTGACAAAGGAAAAGGGCTCTTCCTCATAACCTCGATCCGAATACACTGGCAAAGGCAACACTTTGCTTGGACCCTTCTCCCCAG
TTCTGATACCACTAAAAAGAAGATTTAGAGTAACTCCAGATTTCTTACATGGCATCTCCAGAATGGCTCTGGTATTAATGAATCTAGTGCCTTTTAAATG
TATCCCACGTTTTGTTCCCTACCATCTTTTTTTTCAGATGATGATTTCATTATGGATTTGTGGGATTTTTAAAAATAAAGTTTTAATTTTTTTCCTGGAA
AAATGCACTCCTTATTCTACTTACATTAATGTCCTAAACGTTTGCCCCTTACCCCCCATGCCCTCACCAGACCCCCC
In silico ORF/peptide predictions
Nothing found.
RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.