Detailed information on TCONS_00223664

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00223664 520 280 noncoding Trans
ENST00000513143 podoplanin protein coding TCONS_00223664 545 300 UTR5 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00223664 518 286 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00223664 551 299 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00223664 558 301 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding TCONS_00223664 605 277 UTR5 Trans

Sequence

>TCONS_00245543 (7059 nt)
CTGCGCATTGCCTCCTGGGAAATGTGGTTTCTAAGAGGCAGAGCTCTGCGACTTAGAACTACCTATCCCGTCGGCCTTAGCGAAAGGGGGTGGACTTAGG
CAAGGGGTCCAGGTCAGAGTTTAGAGCTTTCAAATCCCAACTTGCCCCTGGGGATTGCGCGGCTGATGTTTAGAACGCCTAGTCAAGCCAACCGGCTCGC
TCTTGTTTCAGCAAACCCTGACTTACGTCTCCTATTTGACTTGAGGCGGCACAGTGGCCAAGTCGATTGGCCGTGGCAAGTGACCCTCCCTGTGGCTGAA
GTGTTCTGAGGACTGGCGAGAGAGGCGCGCCATGCTTGCCCCCTGCTCAGGTTGGGAGCTTGGCTGCTTCCGTCTCTGTCTCCGTCAGGTCCGACTGTGG
GCTGGCGCTGGGCGCTGGGCTTGCTGGGCTTGCCAAGCCAGGCCGTACAGCTCAGGTGGGAGCGAGCGCTGGCCCGGATCGGAGACTGAGGTCCCTCCGC
CTGGCCCGGGGCGCCGAACTCTGAAGGAGTGGACACTGCAGGTTTAGATATCAAGTCATCAGGGTCTGGCTGTGTAAAAGTTCAAAGTATTGAGGGTGAT
AATTGCAAAATTGAAACAGAGCATGGGACTAGTATCTTGCAGTCTGTTAAGGGTCAAAAATTGCATGTTCAAACAAAAGGAGGCAAAGTGATCTGTCTGG
GAACAGTTTATGGAAATATAGATATTCATGCATCAGATAAAAGTGCTGTGACCATAGATAAACTGCAGGGAAGTTCTGTTACTGTATCTACCGAAGATGG
TTTGCTGAAAGCCAAGTATCTTTATACAGAATCATCATTTCTGTCTTCTGCTGCTGGGGATATTACATTAGGAAGTGTTCATGGTAATATAACATTACAA
AGCAAGATGGGTAACATCACAGTAGATTCGTCTTCTGGATGTCTAAAAGCCTCAACTAATCAGGGTGCCATAGATGTTTATGTCAGCCAACTGGGGAAAG
TGGAATTGAAATCCCATAAAGGTTCTATTATTGTCAAGGTCCCATCTTCACTTCAAGCTCATTTACAGTTATCAGGGAAAGAGGTTGATGTGAACTCAGA
AGTCCATGTTCAGGAAATGGCTGAAGTTCGTAAAGATGATGTTGTAACAGTGACTGGTAAGGAGGCTGCATTTTGCTCTGTCAGATGAATAGCCATTCTC
CATACATAAGTAGAAATGTGGTACACTTAACGGAAGTTTTAGCTTTTTTATATTTTTCCATTATTACGTCCTCATGTTTGACATCTTTTTTTCTTCTAGT
TGCTTATCATTAATATGATGCAGACATTTTGTTTAAAAAGACCTCATTAAATCATTTAGGAACACTCATTAGTCCTGTCATTGGGTAAAATTGATTTTTA
AATTTTCTAGAAGAGCTGTTTTCTAATTCTCGAACTTAAAAATAAACTGAATACATATATTATAATGCAAAATTTAAAACTAACTTCGTGTGACTGGAGT
AAATCGGAATTTTGTTTGGTATGTACATTTTAAACTTGCTCTTTCAGAACAACAAATTCTCAGTCCCACAAATGTGAATCGTTTTTGTACATTTTTCATT
ATATCTGGCTACACTGGTGGCTGATACTATTTTTTTAAGGTTTGTCATTGGTTGGTTTTTTTGTTGTTTGAGACAGAGTCTTACTCTATTGCCCATACTG
GAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTCAAACGATTCTGTTGCCTCACCCTCCTGAGTAGCTGGGACTACAGGCATGC
ACCACCATGCCCGGCTAATTTTTTTTTGTATTTGTAATAGAGACAGGGTTTTACCATGTTGGCCAGGCTGCTCTCAAATTCCTGACCTCAGGTGATCAGC
CCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGAATGAGCCACTGCGCCTGGCCAAGGTTTGTTGTTTTAATGAATAAAAAAATTAATGCTGGTGAAGT
TTTCCTTTAAATTTTACCAGAATGGCATCAAGGAGGACATTGCAATTAGACCGTGTATAGGGATGAATGCTACAAGCTAAACCCATGAGATGCCAACTAG
AAAAAGGAAGAATTGGGGAGTAGGGGAGGGTGGTCTTCATAAGATCAAATTTCAGTTTTAGGTATTCATTTTATATGTCGTGAAAATTAAGAAAGTTGTC
TGTTAAAATTCATAGAATATTACCAAAAAACATAACAGGAATAAAAATAATACCTATACACTCCCAGATATAACTGCATGCCACCTAATGGGCAGACTCA
TAGTTAAGTGGCGAAAATTTGATGAAAATCTAAGTACAGTCATGCATCACTTAATGACAGAGATACATTCTGAGAAATGTGTTATTAGGCAATTTTGTTG
TCATGTGAACATTACAGAGTGAACTTATACAAACCTAGATGGTACAGCCTACTATACACCGAGGCTGTGTAGTAGCCTATTATTCCTAGGCTACACCCTG
TACAGCAGGCTACTGTACTGAAAACTGCAGGGAATTGTAACACAATGGTATTTGTATATCTATATATAGAAAAGGTACAGTAAAAATATGGCATAAAAGA
TAAAACATGGTACGCCTGTATAGGGCACTTACCATAAGTGGAGCTTGTAGGACTGGTAGTTGCTCTGAGTGAGTCAGTATGATGAGTGGTGAGTGCATGT
GAAGGCCTAGGACATTACTACTATAGACTTTATAAACACTGTACAGTTAGGCTACACTAAATTTATTTTTAAGTTTCTTCAATAATAAATTAGCCTTAGT
TTACTGTAACTTTTTTACTTTATTTATTCTAGAGATAGCTGCTTTCTCTGTTGCATAGACCGGAGTGCAATTATAGCTCACTATAAACTCAAACTCTGGG
CTCAAGTGATCCTTCTGCCTCAGCCTCCCTAGTAGCTAGGTTATAGGTGTGTACTACCGTTCTCAGCTAATTTTTAAAAAGTTTTTAGCAGACACAAGGC
CTTGCTATGTTTCCCAGGCTTGTCTTCAGCTCCTGGCCTTAAGTGATCCTCCCGCCTCAACTTCCCAAAGAACATTTTTACTTTATAAACTTACATTTTA
AAAAATTTTTTGAGGCTGGGCATGGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCGTTTGAGGTCAGGAGTTCGAGACCA
GCGTGACCAACATAGTGAAACCCCCATTTCTACTAAAATACAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAATCTCAGCTACTCAGGAGGCTGAGG
AAAAAGAATCCCTTGAACCCAGGAGGCAGAGGGTGCAATGAGCCAAGATCGCGCCACTGCCCTCCAGTCTGAGCAAGAGCGAGACTCCCTCTCAGAAAAA
AATAAAATAAAATAAAAAACTTTTTGACTCTTTTGTAATAATACTTAGCTTGAAACACAAACACACTTTACAGCTGTAGAGATATACTTGTCTATCTTTA
TTCTGTAAGCTTTTTTCTGTTTTTAAAATTGTTAATTTTTTTTAATTTTACTTTTTAAACTTTGTTAAAAACGAAGACACAAACACACACATTAGTCTAG
GCTTTTACTGGGTAAAGAATGTCAGTATCACTTTCACCTCCACATCTTGTCCCACTGAAAGGCCTTCAGGGGAAATAACACACGTGGAGCTGTCATCTCC
TGTGATGATAATGCCTTCTTCTGGAATACTTCCTGAAGGACTTACCTGAGGCTGTTGTATCGTAACTATTTTTTTTTTTAATAAGCAGAAGATATACACT
CTAACGATAAAAAGTATAGTAAATACATAAATCAGTAACACAGTCATTTATTCTCATTATCAAGTATTATGAACTACACATAACATATGTGCTATACTTT
TTTATGACAGTGGAGTGGGTTTGTTTACACCAGCATCACCACAAATGCAGGTAGTGCGTTGCATTTAAACAACCATTAGGATGGCTACGAAGTCACTAGG
TGATAGGAGTTTTTTACCTCTATTATAATCTTATGGGACAACCATCATTTCTGTAGTTCATCGTTGACTGAAACATAATTATGCAGTGTGTGACTGGATA
TCAAATATAGTGAGAATCAACTTGTGATCTAATGCTTGAATTTGATAAGGAGCCAAGAGAGTTACCTATTTTTGGTCCCAATAATCTAAAACAATAATAA
AGTTTGTTTAACTGTGCTCTGAATCATAGCATAACCAAAATTATTTGCATATGTAAGCATGTTTGAATTATAAGCTAAAGCTATTTTGTCATATTTTTAT
TCATTTATTCATAGAATCATATGCCTTTCTAAAATTTAGATTTAGTTTTAAAACTATTCTCACGACTTCAGTCATTATTTCTATGTACATAACTTCCAAG
TCAATACATGCAGACCTGATCTCTATTGTTCTTGTGCATTTCTATTCCACTAAACCAGTGCCACCTAAAACTTAATGTTTAAAAACAAAATTATCTTCCC
CTAGCCTACCTCCTCCTTCTCCTGTCTTTTCTATTTTTCTTTATTTGCTCAGTTACTCAACAAATGTTTGAGTCAACACTGCCGGAAACTAGGAGTGCAA
GGGTAATATAAAGCATGGTCTCACTGCCTTCTGAGGAGCTTACATTCTAGTGAGGAAAGGCAAACCAGAGAATACAGTACAGTGGGATCAATGTTATAAA
CGTATGTACATTGTACTGTGAGAACACAGGGGTGAGGAAGTGAGAGAAGTCAAATATGGCCAAAGTATAGAGAGTAAAGGGGAAAGTGGCATAAAAGTAG
GCTGGAGAGTTTGGGAGAGGTCAGATCATATGGGACAGTTTGGATTTTATATTAAGAGCATTGGGAAGCCCTTGGAAGGTTTTAACTTGGGGTTCACATA
ATCAGATTTTTGTGTTAGAAAGATCACTCTGAATGTTGAGTGGGGATAGATGAGAAAGAACAATGGTGGATGAAGGAGAAAAAAACAACTTTTGCTTTTT
AGGAGGTTACTGCAGTAATTCAGCAGAAGGAGTACAGGGGCCTGGACTCCATAGTGAGCTATCTTAAACTCAGCAAATAAATAGGCCTTCAGTAACTTTT
GCTTGAATATAAAGACGAATGAATGCTATGAGGAAGATGCATGCTTACCTCATTGGTTATTATGAAGCGCCTTAGCCTATTGAGTTCTTTTTGTGTGTTA
CTTGTTATTATGGCTTATACTCCGGCCCCACCTCCTGAACCAGGAAGGGCCAAATCGCAGAATGATGAGTTTATTTCCTGTTCACAGTGGAAGAATCTAG
GTACTGATCAAGCATCGTTTTGCAGAGTAGCACAGACTACCCTATGAGGTTGGTCCCCAGATGGATCTGTATGTTGTCTCTGATAGCAAATTAAATCCAT
TAAAGTAATAATGGACCTCAGGTGAAGAGAGCAGCAGTCTCTGGAGGGAGCTGTGAGTATGAACAGGTGATTGGGTTTAAGAGAAACTTCCATATTTCAT
TTTGGTTTTAAAACTGTTTGGTACCCAGTCAGCCACAGGCCTTATGTATCAACTGGATGAAATAATTTAAGAGGCCTAGAAAATCAGGGCAGATTGCTTT
TTTCTGTGGAGATTTCCAATCTGAAACCAAATTTTGGAAATAATGAGCAGCTTTATATGTGAGCTATTATTATAGGCAGCTGAGCTCAGCTCATCTTGGC
CTTCCTCATAGAGCCCATGAGGGATAAAAATAGAAATACTCTTATTGCTAAAAGCCTGGATTTTATCTGCAGCATGACTTCTGGATAATCTCTGCAAGAA
GCCATGCCAGTAAAATTATTCCCTTAGGTTCCAGCTTCCCACAGGGTTTTGATGTGTCAGCTCTATAATTTTATTTGATTTCCTGCTCCATGGTTTCCTT
TGCTATTGCTGTCACTGATAAATAACTCAGGTGTATAATTCCTACCATGATTTACACGTATTATGTGCTATTCTGAGGTCAAAAGGAAACCTGAGACTCT
CAGGCTGAAACATTTACCTACTAAAAAGCTATGCACAAGTGTGTATTGGGGCTGCATTCTATAATCTTCATGAGAGTCTTGATTCTAAGTTTTGTCCTCT
ACCCATGTGTGGCAAATTTAACATGTTGTGAGTGGCTTAGGTAAGATGCTTCTAATAAGTTGGCTTCTCTATTAGGTTTTAGACTTGGTTCATCAACTTA
GATATGAAACTTGACTGTGGTAAACATCAAGTCTCCAAGCCCAGGTATGCATGTTGTACAAAGTCCTTTGGTCTTTACAACTCCACAATTTAGATGTTTA
AATGTTCAAAGAATATTAGAGGTAAAGTGCGTTGCCAGTGAACGGATTGGTGTTTGTCATTGTCTGGATAGTAGGGAAGCTAGCACTACTGGGTTTACCT
CATTTTAGTAAAACTGGAAATATAAAGCATATACAACATAAATTCATTTGGGATAAAAATAAACCACCAAGTCAGAAAAGAGTTCTTAGCTTGTCTAAAG
GACAGAGGGTAATAACATACAATGGAATTGTTATTTATAGTGGAATACTCGTTCATGGGTTGGAAGAGGTTGAAATGGGACTAAGCTCATAAGATGCCAC
TTTAAAAATCTAGAGACACTGTTTTCTCTCCAAATCGGGAAAAATCCAGTCTTTTGATATGACTAACTCTTGGAAATAGCTCTGATTTTAGAACCCACTA
AAGTTTTTGGTTTTTCAAAGCTTAGAGCACATGAATTTGTCAGCAATGTATATATATTTCAGGACCAGATGGAAGAAATTCAATAACAGAATGAAGAATG
CTCTAAGGCTTATAGGTATCTGCTTAAAAATACTTTGACAGGGAGTTAATGTAGGAACTGTTTTCACGTCATAGTGCTTTTATGGTGTTTTTTTTTTGTT
GTTGTTGTTGTTTTTTGAGACGGAGTCTCTCTCTATCACCCAGGCTGGAGTGCAGTGGCACCATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCCAG
GGGTTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCG

Expression



Full and truncated open reading frames discovered in TCONS_00245543

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.