Detailed information on TCONS_00228373

lncRNA-RNA interactions

Number of interactions: 40

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000367590 xenotropic and polytropic retrovirus receptor 1 protein coding TCONS_00228373 541 246 UTR3 Trans
ENST00000378004 Rho GTPase activating protein 26 protein coding TCONS_00228373 623 299 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding TCONS_00228373 542 271 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00228373 631 289 noncoding Trans
ENST00000426391 zinc finger protein 841 protein coding TCONS_00228373 542 271 UTR3 Trans
ENST00000448214 antisense antisense TCONS_00228373 550 293 noncoding Trans
ENST00000463496 aryl hydrocarbon receptor nonsense mediated decay TCONS_00228373 549 254 UTR3 Trans
ENST00000513143 podoplanin protein coding TCONS_00228373 538 300 UTR5 Trans
ENST00000594295 zinc finger protein 841 protein coding TCONS_00228373 542 271 UTR3 Trans
TCONS_00009095 xenotropic and polytropic retrovirus receptor 1 novel protein coding TCONS_00228373 541 246 UTR3 Trans
TCONS_00030165 antisense novel protein coding TCONS_00228373 550 293 UTR5 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00228373 620 293 UTR3 Trans
TCONS_00039782 GRAM domain containing 1B novel protein coding TCONS_00228373 607 269 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00228373 632 307 UTR3 Trans
TCONS_00067572 DCN1, defective in cullin neddylation 1, domain containing 2 novel protein coding TCONS_00228373 620 310 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00228373 533 305 UTR3 Trans
TCONS_00108999 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00109000 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00109009 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00109012 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00109013 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00109014 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00228373 619 293 UTR5 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00228373 571 244 UTR3 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding TCONS_00228373 542 271 UTR3 Trans
TCONS_00142157 LY6/PLAUR domain containing 6B novel noncoding TCONS_00228373 623 279 noncoding Trans
TCONS_00142168 LY6/PLAUR domain containing 6B novel protein coding TCONS_00228373 623 279 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding TCONS_00228373 614 286 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00228373 611 307 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00228373 640 306 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00228373 610 299 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00228373 619 297 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00228373 630 308 UTR3 Trans
TCONS_00203985 family with sequence similarity 169, member A novel protein coding TCONS_00228373 676 298 UTR5 Trans
TCONS_00219453 WD repeat domain 27 novel protein coding TCONS_00228373 604 284 UTR3 Trans
TCONS_00235708 oxidation resistance 1 novel protein coding TCONS_00228373 619 274 UTR3 Trans
TCONS_00243489 proprotein convertase subtilisin/kexin type 5 novel protein coding TCONS_00228373 623 298 UTR3 Trans
TCONS_00247297 family with sequence similarity 166, member B novel protein coding TCONS_00228373 634 271 UTR5 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00228373 643 298 UTR5 Trans
TCONS_00253055 uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) novel protein coding TCONS_00228373 624 280 UTR3 Trans

Sequence

>TCONS_00253055 (5017 nt)
CCCGCAGCCTTGCGACCAACGGCCGGAAGCGGCTAAGACACTACTCCTGCCAAATACCCTGCAGTAGCGCACCGCGCTATGTCTCCCTCCAGGGATCTGT
ACCACTCCCAATCCTGTTTCGTGCTGGGATTGTAGTCTTGTAAACCTACAACTAACACCTGGGTGCGGATAAGAGACTACAGCTCCCATCATTCCCAGCA
AAGGGCCGTTCTGCACCGAGCTCTTTCAGGATTCCAGTGCAGTTCCGCCATGCGGAGGGAAGCTTGGCTGTTCACAAACCTCTCCTGCACTCGAGGAGAC
AGCTTGGCCGGGGCAGCTGATCTCACCTTGTCATTGTGACACGGTGTCTCCCCAACGTGCCGACTTCATGACTTGTCGTGCCCAAAGTTTACTTTCTCGC
AGAACCGGTAGAGGCCAAGAGCTTCTCAGAGCTTCCGCCGCAGGGTTGCCATGATTAACTCTTAAGTACTCCACGCTTCTGAAACGGGCGTAGGCACAGC
GTCAGTTCTGTACAGTGCGGACGCAGCAGGACAGAATCTCCCTGGGCATCTTTCTGGAGCATCAGTTTTACTGCAAGATTTTAAGAAACAAATTTAATTG
ATTTCCAAGTTAAGAAATTAAACCTTGAAAACTAGACTAAAAAGTCATCTGCACCTGACGTAACAGACTTTCTGCAGGAAGAAAACTCTAAGGAGAGCAT
ATTGTCCATTATTATAAATAGTGAAAATGAGAAATCATAGCAAGTCCCTTGAAAACCCTGCCCTGCCAGTCTTCTAATAGGGCCTTGGTATGGTTTTATG
TGTATTTTCTTTTTGAAGTGTGCTCACCTTTTGAATATACAAATTTGGGGTTTTGACCAAATTTTGCAAGTTTTCGGCTATTGTTTATTTGCTTTTGTAT
CACATTTAATTTTTCTGTCTCTCCCTCTCCTTCTCGGACTCAGTCATTCCACAGGTCTCCAAGGCGCTTTTCATTTTCTTCAAACTTGTTTCACTCTTCA
GATTGGATGATTTCTATTGCTGTCTTCTGTTTCTACTGTTTATAAACTCAACGGTCTTTTTAATTTTTCATTTCATTATCTCTCTATTCCATTCTTTTCA
TCATTTCCATTTCTCTGCTGAGGCTCCACATGAGTTAATTCATTATGAGGATGTTTTCCTTTATCCCCATGAACATACTATACTTATAATAGCTGCTCTC
AAACCCTTGTCTGCTGATGACATCGTCTTGGACATCTTAGAATTAGCTTCTGCTGCCTGCTTTTTATCTTGTGTATAGATTACATTTTAACGTTTCTTCA
CACATTTCATGAATTTTAATATTGTGTACTAGAAATTATAAATAGTAGTTATAGAGACTTTAAATTCTGTTGTATTCCTTTGAAGAGCATTGTTACTTGA
AGAGGGGTTAATCTGACTGGATTCAAACAGCAATACCTACCTCCCCTACAGTGGACACAGTTGAAATCCTCATTCGGTGAACACACACACGCATGTATTG
TATATAGTTGTGCATTTCTGTGTAACTATATATATTTTATCCAGATTTTCTCGTTACCTGTGAGAGTGTTCAACAAGCTACTCTAGCATTACTGAAAGTC
AGAACCTCAGTTTTGTTTGCTTATTGGATTTGAATACATAATGCCTTTGTTTTCTTTTGTAACATTTTTCAATTTGAAGTCTTATTTTGTCCGATATTAA
TATAGGACAACCCAAATCTCTTTTGCTTATTATTTGCATGAAATATCTGTTTTTCTCTTTTCACTTTCAACCAGTTGTGTCTTTCAGTCTAATGTGAGTC
TTGTACAAACATGATAGTTGCATCATGTTTTTTAGTCTGTTTTGCTGATCTCTGCCTTTTAATTTGATAGTTCAATCCATTTACATTTAAAATAATTATT
CATAGGTAGATTTCTGTCATTTTGCTATTTGTTTTCTGTATACCTTACGTCTTTTTATTTTACATTTTCTACATTATTTTCTTCTTATGTATTGGGTTAA
TTTTTTTTAGTAAAATATTTTAACTTTTTATTTCCTTTGTGTATATTCTATAGCTTCTTTTTGTGATTACCATCATGGTGATGACATTTAACATCAGAAT
TTATTTATTTTAATTGCTGCATAGTACTATATTCAATTATATGAACATAGTATAATTTTTAAATCTATTCTACTTTTGATAGTCATCACTGGGATATTTA
ATATGACTTATTTTTTAGATGAGTATCGAGTTTACATAAACATTGAGCGGAACATACAGAGTTCCCATATATCCTCTCCCCACACCCAGCTTCTCCTCTA
TTATTAACACCTTACATTAGTGTGGCATATTTGTTACTCTTAATGAACTAATATAGAAAAGTTATTAACTAAAATCTAAAGTTTGCATTCGAATTCATGT
TTTCTGTTTTACACTCTGTGGATTTTGACAAATGCATGATGACATGACATGTATCCATTATTGCATTATACAAAATAGTTTTATTGTCTTAAAATATCCA
CTGTACTCCATCTATTCATCTCACCCCTTTTCCCCCCAAACTTTTGGAAAGCACAGGTCTTCTTACTGTGTCCATGGTTTTGCCTTTTACAGAATGTCAT
ATAGTTGGAATCCTATAGTATGTAGCCTTTTCAGACTGTCTTTTTCACAGCCATATGTATTTAAGGTTCCTCACGTCTTTTCAAGCCTTGACAGCTCATT
TTTTTAAATCAGTGAATAATGTTCTGTTGTATGCTTGCACCACAGCCAGTTTATTTATTTACCTATTGAAGAACATTATTTACCTATTAAAAACATTATT
TACCTATTGAAGACCATCTTGGTTGGTTCCATGTTTTGGCAATTATGTATAAAAGTGCTCTAAACAGTCACCTGCGGAGTTTTGTGCAGATGAAAGTTTT
CACCTCTTTTGGATTAAGGCCAAAGAGTGTGATTGCTGGATTGTATGTAAGTGTGTTTCTAGCTCTGTAAGAAACTGGCAAACTGTCTTCCAAACTAGTC
ATAGGACTTTGCATTTTCACCAACAAGCTCTTGTTATTCTACATCCTCACCAGCATTTAGTGTAGCCCCTGTTTTGGATTTTAGCCATTCTAATATGTGT
GTGGCAGTATGCCATTGTTATTTTCAATTTCCCAATGACACGCTGTTGAGCATATTTTCATGTGCTTATTTGCCATGCTTATATGTTCTTTAGTAAGGAT
CTGTATCTTTTGCCATTTTATAATTGGGTTGTTCATTTCTTATTCTTGGGTTTTAAGAGCTCTGGAATTTTTTGCATATTTTTGATACCAGTCTTTTATC
AGTTATGTGTTTTGCAAATATTTTCTCCCATTCTGTGGCTTGTCTTTTTATTTTTTAACAGTGTCTGACAATGCAGAAATGTTATTTTTAATATGGTTCA
ACTTAGCAACTTTTCCTTTCATGGATCATGTTTTTGGTGTTTTTGTTTTTGTTTTTCTTTGTGACAGAGTCTCGCCCTGTCACCCAGGCTAGAGTGCAGT
GGTGCAATCTTGGCTCACTGCACCCTCCTCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCGGAGTAGCTGGGACTACAGGCATATGCCACCACG
CCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGATGGTCTCGATCTCTTCACCTCGTGACCCACCTGACTTGGCCTCCC
AAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCTGACATTTTTGGTGTTTTATCAAAGGAGCAAAACCTGAGGTAATTCAGATTCTGCTCTTTGTTAT
CTTCTAGGAGTTTTGTGGTTTTTCCTTTTATATTGGTCTCTGATCCATTCTGAGTAATTTCTGTGAAAGTTGTCAGGTCTAGGTTTAGGGTTTTTTTTTT
TTCTTTTTTTCTCTTGCATGTGGATGTCCAGTTGTTCAGTACTGTTTGTTGAAAAATTATTCATTCTCAATTGAATTGTCTTTGCTCTTTCCTCAAAGAT
AAGCTGACTGTATTTTTATGGGTCAATTTCTGAGCTTTCTCTTATGTTTTATTGATGTTTCTCTATTATTTTTTACCACTACCATGTTGTTTTGATTACT
GTAGCTTTATAGTAGTGCTTAGAGTTGGGTAGTGTCATTCCTATAACTGTCCTTTTAAAATATTTTCTTCGTTATTCTGAGCCTTTTGCCTTTCCATATG
AACTTTAGAATCAGTTTGTCAATATCCACAAACTAACTTTGTGGAATTTTGATTGGGATTGCATTGAATATGTAAATGTAGTTGGGAAGTACTGACATTT
TAACAATGTTGAAGCCTTCTTTACTTGAATGTGGATTATCTCTCCATTTATTTAGATCTTCTTTGATGTTTTTACAGTTTTGCCGGTTTCTTCATATAGA
TTCTATATTTATATTTATTTTGTTATATTTGTACCTAAGAATTTCATTGTTATTGGTGCTAGCCTAAATGTCACTGAATTTTTAAATTTCAAATTCTAAC
TACATTACTGATATATAGGACAGTAATTGACATTTGTATATTAATCTTATATTGTGCAAATTGCTATAATTTCTCATTAAAATTGGTTATTCTAAGATTT
TGTTTTGTGATCTTTTTGTATTTCTCCATAGGCAATTACATCATCTGTGTAAAAGGACAGTTTTATTTCTTCCTTCCCACTCTGTGTACCTTTTCTATTC
TTGTCTTATTGCATTACCTAGGGCTTATAGTATAATGTTATATAGGAATGGTGAGAGGAGACATGTTTGCCTTGCTCCTGATCTTAGCAGGAAAGCATCT
AGTGTTTCAACATTCAGTATGAGGTTAGGGCCAGGCGCGGGGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAG
GAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAAATTAGCTGGGTGCGGTGGCGGGCGCCTGTAGTCCCAGCT
ACTCAGGAGGCTGAGGCA

Expression



Full and truncated open reading frames discovered in TCONS_00253055

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.