Detailed information on TCONS_00229590

lncRNA-RNA interactions

Number of interactions: 42

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257696 hypoxia inducible lipid droplet-associated protein coding TCONS_00229590 523 304 UTR3 Trans
ENST00000262031 RNA binding motif, single stranded interacting protein 2 protein coding TCONS_00229590 601 398 UTR3 Trans
ENST00000263026 eukaryotic elongation factor-2 kinase protein coding TCONS_00229590 557 454 UTR3 Trans
ENST00000263955 serine/threonine kinase 17b protein coding TCONS_00229590 553 302 UTR3 Trans
ENST00000338977 zinc finger protein 721 protein coding TCONS_00229590 560 310 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding TCONS_00229590 606 302 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding TCONS_00229590 594 323 UTR3 Trans
ENST00000399322 diacylglycerol kinase, beta 90kDa protein coding TCONS_00229590 528 299 UTR3 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding TCONS_00229590 579 284 UTR3 Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00229590 721 400 UTR3 Trans
ENST00000591226 tropomyosin 4 retained intron TCONS_00229590 603 304 noncoding Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00229590 621 273 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00229590 656 305 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00229590 656 305 UTR3 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00229590 622 304 UTR3 Trans
TCONS_00051899 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00229590 601 398 UTR3 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00229590 619 299 UTR5 Trans
TCONS_00088780 synaptotagmin XVII novel protein coding TCONS_00229590 617 289 UTR3 Trans
TCONS_00089062 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00229590 557 454 UTR3 Trans
TCONS_00089065 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00229590 557 454 UTR3 Trans
TCONS_00089066 eukaryotic elongation factor-2 kinase novel protein coding TCONS_00229590 557 454 UTR3 Trans
TCONS_00098643 fatty acid 2-hydroxylase novel protein coding TCONS_00229590 629 296 UTR5 Trans
TCONS_00098644 fatty acid 2-hydroxylase novel protein coding TCONS_00229590 629 296 UTR3 Trans
TCONS_00098645 fatty acid 2-hydroxylase novel protein coding TCONS_00229590 629 296 UTR3 Trans
TCONS_00098647 fatty acid 2-hydroxylase novel protein coding TCONS_00229590 629 296 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00229590 721 400 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00229590 666 305 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00229590 633 302 UTR5 Trans
TCONS_00132233 zinc finger protein 43 novel protein coding TCONS_00229590 602 272 UTR5 Trans
TCONS_00132247 zinc finger protein 43 novel noncoding TCONS_00229590 604 401 noncoding Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00229590 617 308 UTR3 Trans
TCONS_00149280 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000416453} novel protein coding TCONS_00229590 544 302 UTR3 Trans
TCONS_00153158 serine/threonine kinase 17b novel protein coding TCONS_00229590 553 302 UTR3 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding TCONS_00229590 572 319 UTR3 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00229590 529 282 UTR3 Trans
TCONS_00203122 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) novel protein coding TCONS_00229590 564 321 UTR3 Trans
TCONS_00211226 antisense novel protein coding TCONS_00229590 601 301 UTR5 Trans
TCONS_00215909 O-acyl-ADP-ribose deacylase 1 novel protein coding TCONS_00229590 590 304 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding TCONS_00229590 611 294 noncoding Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding TCONS_00229590 601 297 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding TCONS_00229590 616 306 UTR5 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00229590 600 295 UTR3 Trans

Sequence

>TCONS_00247058 (5370 nt)
ACTGCAGGACCCTCGGATTTTTGCTGTCCAGGCACCTCGCCCTTCGCTTCATGGCCTTCTAGTAGTTCCAGGGTGTTCGCAGTTGTGACCTGCTTCCCGT
GAGCCTCTGCTCTACGCCCCTGGATGGGGCGTGCATTCCCTACCCAGCAGCCCTCGCGCGGTCCGGCACAGCGGACACCAGGACTCCAAAATGGCGTCAG
TTGTACCAGTGAAGGACAAGAAACTTCTGGAGGTCAAACTGGGGGAGCTGCCAAGCTGGATCTTGATGCGGGACTTCAGTCCTAGTGGCATTTTCGGAGC
GTTTCAAAGAGGTTACTACCGGTACTACAACAAGTACATCAATGTGAAGAAGGGGAGCATCTCGGGGATTACCATGGTGCTGGCATGCTACGTGCTCTTT
AGCTACTCCTTTTCCTACAAGCATCTCAAGCACGAGCGGCTCCGCAAATACCACTGAAGAGGACACACTCTGCACCCCCCCACCCCACGACCTTGGCCCG
AGCCCCTCCGTGAGGAACACAATCTCAATCGTTGCTGAATCCTTTCATATCCTAATAGGAATTAACCTCCAAATAAAACATGACTGCAGTGCTTTGAAAG
CATGAAGCATACCCTGCACTCCCTGGCTCCCTGCAGGATTCCAGCCTCCTGCCGGGCTCCCTGCACAGGACCAGAGCCAGCCTCACGCTGACCCACAGAG
CTGCTTCCCGGGAAACCTGGAAGTGCAGACCTGAGCGGGGACCCTGGGGACTCCTTCCAGCAGGGAGCACATCTCTGCCAGACTCCGTGCCAGCCCCACT
GACTCCACCCGGGCTCCCGCTTCTCCACGCAGGCCACTCAGGACAGCTGAGGCCACGCATTCTCTAAGCAGGGCTCAAGGCAAGTTTGTTGCTACCAGAA
GACACATCTGAGGCTGTTATTTTGAAGGGCTATTTAGGATGGCTGAGATGTCACCAGGATCATGGCTCCTGGAGAGAAGGAACCAGCTCGGGCCTGAGAG
GCAATGCCCACGCTGGAGGGAGAAGTGGGTTTCAGGGAGAAGGTGGACGTGGACAGAAACCAACCACGGACATAATGCAGCCAGCTGCACAACTCGCTGC
TTCCGGGTCACCCTCGTTAGCCTCAAATCCGAGTGATTGAAAGAGCTCCAAACACTGAAGCACTCCAAAGTGATGCGCGGGGCCAGGCGTGGTGGCTCAC
GCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACTCGAGCCCAGGAGTTCAAGACCAGTATGTGAAACATAGCGAGACCCTATGTCTTTA
AAAAAAAAAAAAAAAAAAAAGAGATGAGCAGAAAATAGCCACACTGTCCCCTAAAAGCTGGCTGAGGCTGGCAGGTTCTGCCAGAGTTCTCCTCTGAGAA
TAGAAAGATGGGAAAAGCAGGCAGAGACAGTGTGGGCACTGAGCAGCCAGCGGACCCCTCTGCACCCTGGTTCTCAGCAGAGCCTCCAGGGCTCCAGGCG
CCTTACCGAACTTGGAGTAGAAGTAGCACTCGGGCATCTTGGTCATGTCATACTCATGCAGGAACTCACACTGGTCCCCTTTCTTGCATAGGCCACGCAG
CCAGTGTTTGCACACAACTGTCTTCTCACCACTGATGTGGCGAAACGGACACATGCCCCCTGCCGGCAAGATAGGGACAGGGTGTCAGCAGAGAGGCCAC
CCTGAGCCTGGGGGACACGGCCTGAAGAAGCTGAGGTACCTTCACTTCCTAACTCCTGGAGCCACCTGAAGGCATCACGTCCTGGAAAGGGGCAGAGGTC
CCCCTCACAGAAGGCAACATGATTTGAGGTACTACACTGACAGACATTTTACATTTTAATAGTTACTCATGGCCGGGCGCAGTGGATCACGCTGGTAATC
CCAGCACTTTGGAAGGCCGAGGTGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTGGCACGGAGACCATCCTGGCTGTCACGGTGAAATCCT
GTCTCTTCTAAAAATACAAAAAATTAGCCGCGCATGGTGGCTGGCGCCTATAGTCCCAGCTACTCGGGAGGCTGAGGCAGGACAACAGCGTGAACCCGGG
AGGCGGAGCTTGCAGTGAGCAGAGATCGCGCCACTGCACACCAGCCTGGGCAACAGAGCAAGACACCTTTTCAAAAAAAAAAAAAAAAAAGTTACTCATG
ATCTCACAGATATTACTGTAAGATGGAGGAATTAAAAGGGGGGAGGTGCTGGGAGGCTGAGGTGGGTAGATCACGAGGTCAGGAGTTCGAGACCAGCCTG
GCTGACATGGTGAAACCCCATCTCTACTAAAAGTACAAAAAAAATTAGCCCGGCTTGCGGGTGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCT
GGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGACCGGAGATCACGCCATTGCACTCCAGCCTGGATGACAAGAACAAAACTCTGTCTCAAAAAA
AAAAAAAAGAAAAAAAAAAAGAAAGGAACTTGGCCGGGTGTAGGAGCTCAAATCTATGATCCTAGCACTTTGGAAGGCCAAGACAGGAGAATCACTTGAG
CCAAGAAGTTCGAGATCAGCCTGAGATCTTGTCTTCACTACATAAATAAATAAGTAAGTAAGTAAGTAAGCCAGCCAAGCAAGCTTGGGGACCAGGCACA
GTGGCTCACACCTGCAATCGCAGTAGTTTGGGAGGCCAAGGCAGGTGCATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATAATGAAACCCT
GTCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGTGTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGG
AGGCAGAAGTTGCAGTGAACCAAGATGACACCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGCTGGGTATGGTGGTGTACACCTGTAGTCCTGGCTACTGAGGAGGCTGAGGTGGGAGGATCACTTGGGCCCAGGAGGTCAAGCTTGCAGTCA
GCTATGACTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTAAGATGCTGCCTCTTTTTTAAAAAAAAAAAAAAAGGAAAGACCAATTTCAGAATTGAGG
AAATGTGATGTATACACATGGAGGGACGTGTCCCTTCTGGGACAGGACCTGATGGGACAGAGCCAGCCTCTGGGGATGTGTGAGACTTCTAACGGGTGGC
CTGGCAAGACCACCATGGAGGTCCGACCAGAATGAGGCCGCTGTACACTTCTGCTGTCCAATATGGCAGCTGCTAGCCCCATGTGACTACTGAGCACTTG
AAATATGACTAGTGTGTCTGAGAATTTTGTTTTAAATGTGATTTGATTTTACTTAAATTTGAACTGCCACATGTGACTAGTGGCTACTGTATTAGTCAAC
AGAGAGACAGAATGCCCTGTGTTAGGGATGGCTGTGCTAACAGAAGGTGGCTGGTCAGAAGGGCAGAATTACTGAGCAAAGACATGGGAATGAGACCAGA
AACTCAGTGGAGGTAATGACGTTCTGACTGGACAGTGTGAAGGTGGCCTGGCTGATCTGCCAGAAAGTCTCCTACCTCAGTGGTAAATGACTACGTTATA
GAAGCAAAACTCACCAAAACCATTCATTAAAACCAGCCCTTTGCTCTGATTCTCTGCTCTCTTTTTCAAGCTTCTGATTAATATTTAAGTCTCCTAAATA
AATTTTCCTACAGGGAGAAAAATGCCCAGACCATGGAAAGTTTAGGTTGTACCTAGTGATACTTCTTTCTTTCTTTTTTTTTTGTTTTGTTTTGTTAAGA
CAGAGTCTCACTCTGTTACCTAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTACAACCTCTGCCTAACAGGTTCAAGTGATTCTCCTGCCTCAGCCT
CCCCAGTAGCTGGGATTACAGACGGGCGTCACCATGCCCAGCTAATTTTTGAATTTTTAGTAGAGACGATGTTTCACCATGTTGGCCAGGCTGGTCTCAA
ACTCCTGACCTCAGGTGATCCATCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCACGCCTGACCCCTAGTGATACTTCTGATGGAT
TAGCCCGGCCCACATACAATTATTAAAAGAGCACAGCCAGAGGGGTAACAAGATGGCGACCAAGACAGTGGAGCTCCATAAGCTGAAGCTTGCTGAACTA
AAGTAAGAATGAATGTCTTGCTCGTGGTTTGGAGACGAGCAAATAAAGCAAGATTTTTTTTTTTTTTGAGATAGAGTCTTGCTCTGTTGCCAGGCTGGAG
TGCAATGGCACGATCTCGGCTCACTGCAACCTCTGACTCCCTGGTTCAAGGGATTCTCGCACCTCAGTAGTTTTGTGTAGTCTGTGTTGAGGGCTGGTTA
TCGAGAACAAGACCCCGCAAGATGGGTTATCATGGGGTGTTTCGATGGGAGGCCACAGAAAACCATGAGCCAGTGGAAACTATGGAATGAGAAAGACCTG
GGTTCAGACACTGGGCTCTGCCGCTTATTAACTCTGTGACATTGAGAAAGTTCCTGAGTGTCTCAATGCTGGGGGCTTCTCTCCATGTCACAGGTCAGCT
TGTGGCCACGGGGAATGCGAAGTGATAAGGCAGCCTTAGAGCCAGGTTCAGTCCTGCGTTTAGGTTTCAGGTGGAACACCCCATCAGGGTCCTAGCCTGT
CCAAACCAGTTTTATCTACAGAGATCGTTAGTCTGTAGAAAGCAATGTAAGCCAGAGACCTGGCGGCCTCCAAGTCTGCCGGGGAGAAGGAGGTGGGAGG
GCGCCTCCGGAGGCACATCAGGGAGCCCGGAGTTTCTTACCTTTGCCGCAGGCAGCTTTCAAAAAGAATTCACAGACAGCAGCGCCCGACTCTGTAGAAA
GGAGAGAAAAGGAGAGGAATCAAAGAGGTGCAATTTGCTATTGACAATGTCTGAAGACAGTGGGAGGGAACCCTTCTGACCTCTGACCCACCAAGGGTTC
AGGGTACAGGAAATAAAGTAGCAAAAATTTGCAAAGCCCAACCAAGCAAGGAAGAAGCTGCTTAAGTTAGTCACGCCCTACAAAATGAGACACATACATT
GAGAACAGTCATTACCCAGTGCTTTGAGAGCCTCCTGTATATAAGATCCTTTCAAGGAGTTAAGAGTGGGTGGGGAAAGGAAGGCTGGAGTACGAGATCA
CAGAAATAATTTTTTTTTTTTTGAGATGGGGTTTCGCTCTAGTTGCCTGGGCTGGAGTGCAATGACGCGAT

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.