Detailed information on TCONS_00239437

lncRNA-RNA interactions

Number of interactions: 25

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000375120 OTU deubiquitinase 3 protein coding TCONS_00239437 578 304 UTR3 Trans
ENST00000482603 glyoxylate reductase/hydroxypyruvate reductase processed transcript TCONS_00239437 572 277 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00239437 554 284 CDS Trans
ENST00000517408 antisense antisense TCONS_00239437 530 287 noncoding Trans
ENST00000521027 pleckstrin and Sec7 domain containing 3 protein coding TCONS_00239437 554 277 CDS_UTR Trans
ENST00000553936 gephyrin nonsense mediated decay TCONS_00239437 577 288 CDS_UTR Trans
ENST00000569455 cadherin 13 processed transcript TCONS_00239437 525 289 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00239437 567 286 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00239437 507 291 UTR3 Trans
TCONS_00014134 collagen, type XVI, alpha 1 novel protein coding TCONS_00239437 587 307 UTR3 Trans
TCONS_00032151 long intergenic non-protein coding RNA 959 novel protein coding TCONS_00239437 512 269 UTR5 Trans
TCONS_00080928 SH3-domain GRB2-like 3 novel protein coding TCONS_00239437 601 262 UTR5 Trans
TCONS_00109011 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) novel protein coding TCONS_00239437 536 286 UTR5 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00239437 603 286 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00239437 606 277 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00239437 619 276 UTR5 Trans
TCONS_00192322 tec protein tyrosine kinase novel protein coding TCONS_00239437 617 279 UTR5 Trans
TCONS_00202828 myotubularin related protein 12 novel protein coding TCONS_00239437 623 289 UTR3 Trans
TCONS_00203663 ribosomal protein L3 pseudogene 6 novel protein coding TCONS_00239437 518 254 UTR3 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00239437 603 277 UTR5 Trans
TCONS_00224726 caldesmon 1 novel protein coding TCONS_00239437 568 290 UTR3 Trans
TCONS_00224728 caldesmon 1 novel protein coding TCONS_00239437 568 290 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding TCONS_00239437 610 279 UTR3 Trans
TCONS_00239255 tumor protein D52 novel protein coding TCONS_00239437 629 286 UTR3 Trans
TCONS_00245543 long intergenic non-protein coding RNA 963 novel protein coding TCONS_00239437 604 285 UTR3 Trans

Sequence

>TCONS_00245543 (7195 nt)
ATCCCTCTCTTCTTTCAGGGGTTGCAGCAGCTCAGACAATCCTTACCATGTGAAAGGAGGAATGACTGTCATGGCATGAAAAAAGCATCACTATGAAAAA
GAAAACTCAGTAGAAGATAATGGCAAGTCCAGACTGGGGATATGATGACAAAAATGGTCCTGAACAATGGAGCAAGCTGTATCCCATTGCCAATGGAAAT
AACCAGTCCCCTGTTGATATTAAAACCAGTGAAACCAAACATGACACCTCTCTGAAACCTATTAGTGTCTCCTACAACCCAGCCACAGCCAAAGAAATTA
TCAATGTGGGGCATTCCTTCCATGTAAATTTTGAGGACAACGATAACCGATCAGCATTGCTGTAATCTAGTGAGGCATCTTGGACTTCTGGAAAACGCCC
AGGTGGTAAAGACAATTTTTGGAACTCCCAGCTCTCTATTTTCAGTCTTGCTTCTCAAAGTCACCATCACGTCTCTTCTCGTCATTCCAGTATCTGTATG
CTCACTTCACTGTCTCTGAATAAACAGCATTTATCCAGAAAGGTCTAGTGAACCAGTCATTACAAATATAACAACTAAAAAGAAAAATATTTTCTAATTG
GGATGAGTATGAATGAGCACAGTAGAAAAGAAAAACAAAGCAGTGACTGAATTATCCTTATACTCCAGAATCTAGAACAAATTTTGCTACAGAGTTAGCT
TTTCATGAAGGTTTATTGAATATTTTATTAAATGACAATTCCATAAAACAGTTCTACTGATTTAAAATGCTAAATTTGTTTATGAGTTTCTGAGGCCTAA
ATTTTAGGCACCTTGGGACTATGTCCATTATTAATATTAGATTAGGTCTGGTATTATATGCATTTAACTAATATTATCATTGGATAGGCTCTCCAAACAA
AGTTTTATAAGTGCCCCACTGCCCCACTGGTACTCTCTCTTGGTCCCTGGCCAGGGATTCTCAACAAAGCTGTCAAGATATACTTTTGTGTCTTCATCAG
TTACACAGTAGGTGATGAATGGTTCATTACTCAAAATAAACTACTAAAGATTTTTGATGCATACTGTCTTTGTTGAAAGAATGAAGGAATAAACTTGCAA
ATTAAAGGAGATTCAAGGACAGCCCTGTAATGATATAATTCACTCACATTGCAATATGCTTTCTAGGAGTTAGAAATAGGTAAAATTGTAGCTCGTGTGG
CTGGGAAATGTGTATAATTCATGGAATAGCTCATCAATGCCACAGTCAGGGGTGCACCATACATATGACTGTCATCCTCATGGATGTGGGGGAAAACAAG
ATGAAAGTTTAGGCACTAATGTTTGTTTTCACTTCTACTCAATACAATTTAGTGTTGGTTTATATTAAATGCAAAGATAAGCTAGAGTTTGTGGAGCATC
AGGCTAACAATCGGTTCCCTTTTCTTCCAGTGCTGAAAGGTGGTCCTTTCTCTGACAGCTACAGGCTCTTTCAGTTCCATTTTCACTGGGGCAGTACAAA
TGAGCATGGTTCAGAACATACAGTGGATGGAGTCAAATATTCTGCCGAGGTAATGTAATTTAGTAAGTGAGAGATAATTACCCTGAGAGTACTCCCAGAA
GCAGCTTCTCCCTTCTTTTCTAAGACAACATCATAATGACTCCAAAGGAATGGGTATTCCAGTAAGGAACTCCCAGTTTCCATTAAAATCAAGCACAGAC
ACATAATGTTTGGCAAGAGAGAGAAAATTTTCATGTGGAAAGAGGCAGCTAAACTCCTGAGCCCAAGATTCACCTTTCCCTGAGAATGCCTCAAAAGCTG
TTACCTTGATATCAAAGCTAGCTTCAAAGGATGACACTGCTCCTCCTTTAAAGCTGTAACCCCAAATGGAACACACCATCATTTCCTCTTTATTTAAACG
TTCAAGTTTGGATACACCAGCAGTATCGTTGTGGCCAAGCCAGGACAATTCAATGAGACTCTACTAAGAGCTCGAATTTAACCACAGCAATGGTCACAGA
ACAGCATACACCTAGATGAGGGTCTAACCTTCCCTGGCTCTTAACCTGCTCTCACATGGAAGTTTGTGACTTATTTCAGGACATTATTATCTGTATATCC
AAAGAAAAATGGAGACATGTACACCAAACTCTCAGCAGAGGGTCTGGGAGATTAAAATGTGAGAAATTTTGCTCTTTATTTTAGGTGTATGAATTATATA
ATACATGTGTACCCATATATGCAGGTTGACTTTTTAATTTTACTTTCATCAAATGAATTCTATAATATATATAATTTTGCAACCTGCTTTTTTTCTATTT
ACCCACTTATCATGACAATTTTTAAAAATCAGAAGATTGAATTCCACCTTTTTTACTGTCAGCATAGTATTTCATTTGGGTGAATGCATCAGAATTTATT
TAACTGCCTTCTATTGATGAACAATCACAACATATGATTTTTGTTATATTGGTTTCTTTTGCTTTTATTAAAAAATGCTTCAGTGAATATATCTGTACAT
ATATCTTGTGCACTAGTGAAAGTAATTATGTACGATAGATTTTTCCAGGGCAGACTGCTACGTTACAAAGTATATGTATCTTCTATTCTGATAGAACATC
AGCAGATTGTATACAAATAAAACTTGCTTTACCTTGTGTTGTAAAGCATGACTAACACCTTTCAATGCTGCAGAAATCTGTTAATTGGGTTTTCCCCTCC
ATAAAATTGAAGGTAGATTAAAATTAAATGGACTAAGAGCCTAAATTAGTATTATCTTTTTGGAAGGATAGTTGGTAGTATCCAAGAAAACTAAATTAGT
GACTCTCTCATCTAAATTGAGAAAAATCAATATAATCCATGCTAGATATTGAGAGACACTTAGCCACAAAGTTTAGCATATGATTAAATTCAGTTCAATA
AACCTTCTTGAGATACCTATAAGACAATAGGTTTGAGAGGCAATGCAGCCTGTTGCTTAAGAATGCAAGTACCCAGCTGACTGCCAGGGTTTGAATCAAA
GCTCGACCACTTACTAGCTGTACAAATTCAAACAAATCACTCTACGCTCCAGTATTCCTATATAGAGAATCTAGATAATATAGCATTAGTATCTATCTTA
ATAATTGTTGACAGCATGAAAAGAGTTAACCCATACAGAGCACACTTAGACCAGCACCTTTCATGTTGCATGTGCTGAATAATGTTACTTAACATTTCCG
TAGAGACACAAGCAAACATTTTTCAAGCAGGGAAGTATAGGCATAAATTATTGTGATTAAATAAATATAGTAGCAAATGGCAGTATGACTATTCACAAAG
AAGCATAGGAATACAGATGTAAGAATAATTAATTACAAGTAGGGACAGAATCTACACTGGCATGGTCAGAGGAAATTGCAATAAGTGATCCCTCTTAATA
TACTGTCTTAATCATTCTTTTTTCATTCAACAAATATTCACTGGACACCTACAATATGCCAGATACTGTCTTTATTTTTTGTCGTTATTTATTTATTTAT
TTTTGAGAAAGAGTCTTGCTCTGTTGCCCAGGCTGGAGTCCAGAGGCACGATCTCGGCTTACTGCAACCTCCTCCTCTCAGGTTCAAGTGATTCTCCTGC
CCCGGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCACACCCGGCTAATTTTGTATTTTTAGTAGAGATGGAGTTTTACCACGTTGGTCAGGCTG
ATCTCGAACTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGATACTGTTTTTAAAAAGTACTTGCTATCAGAA
CTTGCATTTGATAGGGAAAATAAAAATTTCAGAGGAAGGAAGGCAGGAAAGAAGGGAGGGAGGAAGGAAGGAAGGGAGGGAGGAAGGAAGGGAGGGAGGG
AGGAAGGGAGGGAGGAGAATAGGAAGAAGAGAGATTAAATAAGTGATATGGATAGAACTGTTTTGATTTGTGGTGGTTACTTTATATTGGATGATCAGGA
AAGAATTATTTAAGGAGTGGCATTTGAGTTCAACCCTAATTCAAGACAAAAGTCTGCCATTTGAAGATCATGGGGAAGGAAATTCCAGAGAAAATTAGAA
GCTAATGCAAAGGCTCAAAGTTGTGAACATGTGACGAAGTATAACCTGTAAGATGTGAATGTTGATAGGTGGGGAAAGCAAGAAATGAATGATAGTTGTT
GTACTTATTGATTGAGCATTTAAAAACCTTATCCTAAGAAGGTAAAATTAAGCAGGTTTGGCAAGAAGGAAATCTAGAGTTCTATTTTGGCCAGATTAAG
TCTGAAACATCTATTAGACATCCATGTAGAGATATCAAGAATATATCAAGAATACATATATACATACTTGGATGTACAAATCTAGAGTTTGCAGAGACGT
TAAGCTGGAGATATTTATTTGAGAGATGTTTGGAAAGGGCACGAACGTGCCTGAAAGAATCTGTTCTTGGCCAAGACTCCCAGGAACTCCAGGAACCCTT
TCTCATAAATTTACTATAAAGTACCTCATGTGAGAGAAAATTACTTCAATTATTTTCCCAAAAACTAGTTAGTCATATTTCCTGATCTTTTCAAAACAAA
GAGAGATACATTTAAAGGAGTAATATTAAATAACAATATCGTAGGAAAGGACATTTTGCTTACTGGTTCCAGGTTTTGTAATCTCTACCTGGCACACAGA
TAACCCTTCCTACGAGTGAGAATGTAACTCTTCTAATCCACTGGATAAAGGTTCACATAAGTTTTATGTATCTAAGCCAAGATACATCATCATATGGTAA
CAAGTTAACTTATAACTTATCTTTTTTCATCACACTGGTATAAATAATTAATTAACCATAGTATCATTTTTAGCTTCACGTAGCTCACTGGAATTCTGCA
AAGTACTCCAGCCTTGCTGAAGCTGCCTCAAAGGCTGATGGTTTGGCAGTTATTGGTGTTTTGATGAAGGTGAGTTACAGATAATTACACAGCTCTGCTT
CCACTGTCTTACCAATTAGACCTCAAAATAGAAGGAAATAAGGCAACATATATTTTAGAATTTCTTATTTTAAAGTTTCCATTTAACCGATGACTACAGG
TGAACAAATAGTTCCCTAGTATTTTATTGCTTGGTTTTATCTCTGCTTTTCCCTCTTAAAGAGAGAAATGAGTTTCAGGTGGAGGTGAGATAGAAATGTG
TTCACAGGGAAAAAGGAATTTCTATTTTCCAGCTCTTCCAAATTCCCTTTCCTCTAAATTTCCTACATCATAGATTCTGAAATTTATTAATTTAATGTCT
CATCAGGAAAGAAATATTATTAAATATTAATAAGGAAACCTGAAATCATAGATTCAGAAATTTATCAATTTAATATCTCATTAGGAAAGAAATAGTAAGA
GAATTTTTTCTTACAAAGAATATTCAATTGATTTTTTAAATGGGAGATGTTGCTCAAATCCTCTATAGAAGAATCCCTGAAAAGTTCTATGAAAAAGTTA
TTATTAAATTGGGTATGCCCGGGTAACCAAGTAACTCTTGAAATTATAGCACTTCTACTTAACCTTTACTGAGCACTTACAATATGCCAAATACTGTAGT
AATGAAAACTAATATAACAGACCAAAATAAGAGATTTGTTTTTGTGTCAGTTTTGATAAATTACTAGATTTTGCCCTGTATAACTTTGAACATATTGCCA
ATAATTAAGTTTAAATCAAACTTTTTGTTTGCTACTTTTATCTGTAGGTACATATTATAAACAATTTATAGAGTACAAAGGCCCTCAAAGACATACAGCT
TGAAAAATCTCCCCTTCTAAAGCAGAGAGAAAATACCTTACCTCTTGTCAGTTGTTAATTGAAAAAAAATTCAAAATTTAGCTAAGCAGTGTTCGATTGA
TAATAATCTTTATCTCATACTTTATTTTCTTAAATCTCCAGGTTGGTGAGGCCAACCCAAAGCTGCAGAAAGTACTTGATGCCCTCCAAGCAATTAAAAC
CAAGGTAAACACACTAAATAAGTAGTTTAAATCAGAGAACAAGAATTTACAGATCTATGGAAATCATTTAATGAAGTATTAAAACTGGGGAGTAGGAAGG
CCATAGTAAAAGCTACCAACTGAAAATCAAGGTGCTACTTCAATACTGCCTACCTCTGAGAAAGTCTCTAATGCAGGGAATTGTTTTGGTTTTCTGTTTT
TCATAGTTATGGTTTATTTATTTCAGCAGAATATGGCCTGTAGAAAACCAGATTACATAGCCATTTAAATTTGCTTGAAAAACTATATCTAACAAAATTG
TGATTTTCCATTTGATAAATAAAGATATCTCTAGTTTTTTAGCAGTAGAAAAATTCAGAAGTAAAGGGCATTCTTTTGAGATATGGTTGATATACAATCT
TTGATAACCATAACTCTTGTCAACTCAAAAAAAATGGATTTTTTGATATATACAAACTTAGCTTTATTGTTTTAAAGGTAAGCAGTTAAACCATAAATCA
GAGATTTGTCATGTTTTGCAGCATGGAGAACTGTCATATATTTGTGTAAAATGAATCTGATTTATGCTGATTCTAGAAAAGATTAAACTTAAATGATTGT
CTTATAAAGTATAAATGACAGAGATAAAAAATAAGCCCTCAACTCAAGAGTTATCAAAAAAATATGAAAAGAAAATATAAGGAAATAATTAGTGAAGATA
AAAGCAGAAAAGAATAAAATAAGAAAGAAAAATGATGGCCGGGTGTGGTGGCTCATGCCTGTAATCACTGCACTTTGGGAGGCCGAGGCGGGTAGATTGC
TTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATAGTGAAATCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCGTGGTGGCGCACACATGTAG
TCCTAGCTAATCAGGAGATTGAGCCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGTAA
AAGAGTGAGACTCCATCTTAAATAAATAAATAAATAAATAAATTTTGAAAAGAAAAATGATGGCTAAGTAAGGGGTAAAATTTTATCAATAAATTGAAAA
GTTGATTCTTTGGAAGAACAACAAAAAAGTCAGACTTTGGGGAAGCTGGATAAAGAGAAAAAAAGCCGTACATATAAAACATTATTAGAAATAAAT

Expression



Full and truncated open reading frames discovered in TCONS_00245543

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.