Detailed information on TCONS_00239578

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00016418 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-... novel protein coding TCONS_00239578 710 330 UTR3 Trans

Sequence

>TCONS_00239578 (512 nt)
CTTTACGGGTGTCGGGCTGGGGGACGGTCAGGTCTTTCCCTTCCCACGAGGCCATATTTCAGACTATCACATGGGGAGAAACCTTGGACAATACCTGGCT<br />TTCCTAGGCAGAGGTCCCTGCGGCCTTCCGCAGTTTTTGTGTCCCTGGGTACTTGAGATTAGGGAGTGGTGATGACTCTTAACGAGCATGCTGCCTTCAA<br />GCATCTGTTTAACAAAGCACATCTTGCACCGCCCTTAATCCATTCAACTCTGAGTTGACACAGCACATGTTTCAGAGAGCACGGGGTTGGGGGTAAGGTC<br />ACAGAATCTCAAGGCAGAAGAATTTTTCTTAGTACATAACAAAATGGAGTCTCCTATGTCTACTTCTTTCTACACAGACACAGTAACAATCTGATCTCTC<br />TTGCTTTTCCCCACATATACAACCAGAAAACATGCATTGAAAATAACAATTGAATGAAATCCCTTTATAAAATGTTTAATTGGCCAACCAGGTGACCAAA<br />TGTACCTGAAGC

Expression



Full and truncated open reading frames discovered in TCONS_00239578

In silico ORF/peptide predictions
>peptide 1 (56 aa)
FTGVGLGDGQVFPFPRGHISDYHMGRNLGQYLAFLGRGPCGLPQFLCPWVLEIREW

>peptide 2 (51 aa)
LYGCRAGGRSGLSLPTRPYFRLSHGEKPWTIPGFPRQRSLRPSAVFVSLGT


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

Best hit to NONCODE v4:
NONHSAT004062 (Evalue: 0)

Best hit to Swiss-Prot:
sp|P61583|NP5_HUMAN (Evalue: 3.0E-13)