Detailed information on TCONS_00242434

lncRNA-RNA interactions

Number of interactions: 41

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000276431 tumor necrosis factor receptor superfamily, member 10b protein coding TCONS_00242434 520 251 UTR3 Trans
ENST00000359543 epithelial membrane protein 2 protein coding TCONS_00242434 607 298 UTR3 Trans
ENST00000397755 zinc finger family member 788 processed transcript TCONS_00242434 546 291 noncoding Trans
ENST00000432564 hydroxycarboxylic acid receptor 1 protein coding TCONS_00242434 603 292 UTR3 Trans
ENST00000448612 WD repeat domain 27 protein coding TCONS_00242434 508 313 CDS Trans
ENST00000450928 antisense antisense TCONS_00242434 510 300 noncoding Trans
ENST00000494969 colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) protein coding TCONS_00242434 604 301 CDS Trans
ENST00000524264 SAP30L antisense RNA 1 (head to head) antisense TCONS_00242434 573 313 noncoding Trans
ENST00000534514 flavin containing monooxygenase 3 processed transcript TCONS_00242434 552 317 noncoding Trans
ENST00000572705 transient receptor potential cation channel, subfamily V, member 1 protein coding TCONS_00242434 635 298 UTR3 Trans
ENST00000583694 FYVE, RhoGEF and PH domain containing 4 protein coding TCONS_00242434 505 293 UTR5 Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00242434 574 298 UTR3 Trans
TCONS_00027001 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding TCONS_00242434 613 290 UTR3 Trans
TCONS_00027009 programmed cell death 4 (neoplastic transformation inhibitor) novel protein coding TCONS_00242434 613 290 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding TCONS_00242434 609 300 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00242434 609 300 UTR3 Trans
TCONS_00065093 UBA domain containing 2 novel protein coding TCONS_00242434 619 305 UTR5 Trans
TCONS_00065094 UBA domain containing 2 novel protein coding TCONS_00242434 619 305 UTR5 Trans
TCONS_00065103 UBA domain containing 2 novel protein coding TCONS_00242434 619 305 UTR5 Trans
TCONS_00095049 epithelial membrane protein 2 novel protein coding TCONS_00242434 607 298 UTR3 Trans
TCONS_00095050 epithelial membrane protein 2 novel protein coding TCONS_00242434 607 298 UTR3 Trans
TCONS_00095052 epithelial membrane protein 2 novel protein coding TCONS_00242434 607 298 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00242434 635 298 UTR3 Trans
TCONS_00118919 potassium channel tetramerization domain containing 1 novel protein coding TCONS_00242434 625 292 UTR3 Trans
TCONS_00119961 ring finger protein 152 novel protein coding TCONS_00242434 646 299 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00242434 644 289 UTR5 Trans
TCONS_00141404 GLI family zinc finger 2 novel protein coding TCONS_00242434 606 279 UTR5 Trans
TCONS_00161618 interferon gamma receptor 2 (interferon gamma transducer 1) novel protein coding TCONS_00242434 529 298 UTR3 Trans
TCONS_00163084 T-cell lymphoma invasion and metastasis 1 novel protein coding TCONS_00242434 607 293 UTR5 Trans
TCONS_00194682 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00242434 628 318 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding TCONS_00242434 600 301 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding TCONS_00242434 600 301 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding TCONS_00242434 609 289 UTR5 Trans
TCONS_00219475 WD repeat domain 27 novel protein coding TCONS_00242434 508 313 UTR3 Trans
TCONS_00230128 solute carrier family 26 (anion exchanger), member 5 novel protein coding TCONS_00242434 643 293 UTR3 Trans
TCONS_00233179 BCL2/adenovirus E1B 19kDa interacting protein 3-like novel protein coding TCONS_00242434 622 298 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00242434 555 312 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00242434 555 312 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00242434 555 312 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00242434 612 293 CDS_UTR Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00242434 650 304 UTR3 Trans

Sequence

>TCONS_00240688 (7152 nt)
GTCTGAAATTAAGATTAAGCCCTATGAGTCTTCAGTGAACAAAATGGAAATAAATGCTGAAAATCCCCCTACCTATCTTGAAAGCATACCCTGGAGTGAG
AGGTTGTTTTCTCAATTAAAATTTATCTTTTCAGGTGTTTTGTAGAAGTCTAAAGACTCAGTCAGTGGGCATGAGTCATCTGGCTGTGGTAAGATTAGAA
ATTCCTAACACATGATATAGGAGGCCAGTGCTCCAGGAGGCAGAGAAAATGAAGGAAAACAGCTTTCTACAGCTCTTACCCCCACAACCCCCATCTCTCT
GTAACTTAATTTTTCTTCTCAAGTTTCGAACAAGTACAGATAGAACAACTTGTTTTCTAATCTTTTTCTCTTTTTCTCATTCCTCTTCTTTCTTTATTCT
TCTTTTCCCCCCTCTTTTTGTTTCCTTTTCCTGACTCTTGAAAACCATGGCAAGTGCTTATTATTTCAGTTGAATATGTTAAAAATTGTTATCAAGAAGT
TGATTTTTTGTGTATAAAAATGGTGAACTAAGATACTGTTAAAAGAGTGGAATAAATGAAGAGGAGAGACAGAAGAACCAAAGATGGGAAAAGGACTGGA
AAAGAAAAAGAGACTAAAAGGAAGAGGCTGAAAACTTAAAAAATTGGATGAAAATTATGAAGATAGTCTGACATGATATATTAAGAGCTCTGAATGATGC
CTAGGGATGTAGAAGAGGAGAAAAACACTTGAGTAAGTAAACAGAGTTTATGAGACTTGTTTATGCCAGGAAAGCAAGATGAATATTTCTGACTAAAAGT
TAATTAACTATTTTGCCTCAGCAAGCCAATTTGTCGTCTTAAACTTTGATTCATTAACTACAAGCTGAGACGATTGCTTGTTCCTTAGTGTACTTGTAGA
CTGAGTTTGTGTTAAATGGTGCTGTGAGATATTGGCTGTTCTTCCCAATTGAAACTAACCAAAAAGGCTATTATAAAGAAAGTAAGACTTTTTAAGTGGC
AGTAAGTAGATGGGTATTCTTTCAGAGCAAAGCCTAAGAACTATATGGCTTAATTGCAAAGCTAATCAGCCCTTGTTAAATAAAACAAGAGTAAATCCAG
GATTTTTGAGTCTGCACATTTAATGGGACATGAAAGTTGACGATTTAGCAATTCTGAAGTTTTAAGACTTGTGAACTTACGAGTTGTTCCCCTTCAGGGT
TTTTCACTTGGAGGCTCTAACCCTTTTTTTTTTTTTTTAATATGTTGTGCTGAGAAAAATGAATCTCCATTTGTCAAGATACTGGCTTTGTCTCTTATCA
TTGCATGTTTTGTGAAAGCCCATTTGTTGGATAAGGAACTTCTTTGAACTCGTAAATGGGCAAGTGAAAAGCAAGAAGTTTAGGGAAAAAGAGTACCAAC
TATACTCCTAGTATATTTATCTTTAAGATTTTAATAACAGCTAAAGAAGATATGTGAAGAGTCGGAATATATGCTTCTTTTCAAAAAGTCACCTCATACA
CAACTAAATCAATATCATAGGGCATATTTGTGAAAATTCATGTAACTTAGGTAAGTTGTGTCTGTAAACTTTGATACAAATGGAAAAGAGGAAACACTAT
TCTTCACAAGGAGTGATTGCTTTTTACTTACACCACACAACATAAAACCTTCTGTCTTGCACTGGCTCTCTGATCCTAGCGTGGAAGACAAAGAGCGCTG
TCCCTCTATGAGAATTCTTCTTATTAGTGCAGATACTGGAGCCCCTTCAATATGAACTAGACCATGAGTTCCATGAGAGTAGGATGTGTGTTCATAGCTG
TACCTAGTACCTAGAACAATGCTCATTGAATGAATAAGGCAATGACTGAACAAATGATGAATGTACCAAGACATTTTGATAGCTACTGAGAAGGTTATAG
TCTTGTTTGGTGAAATGAATAATGAATTAAACCCGAGTTTTCCGCAAAAGTTTGGACTAAGCAGAAAGTTTATGGTGAATGAGTTACAATCTTTGCTCTT
CTACTTATTATGTAACTTTGGGTAATCTATTTAGTAAAAGGTGAAAGATTTATACGATCTGAAGAGAAACCAGAGCATGGGTAATCTATTTAATCTCTCT
AATCTCAATTTTCTTATTCATAAATTAGGGTTAATAATGATAATACCTTTCTCATAGGCTTACTGTGAGGAATGAAAAAGATAATGTTTGTAAAGTGCTT
AGCAGAGTGCCTGCTACTTGGCTGTAAGAATTTATGAAGCTGCTGTCTGCTATGAGGTGATTAATCCTAAAATGAAATTTTGTCTCAAAAGAGAGTCAGA
AAATACCAGCATCTACAGTTGAGGCTTTAGAAAGGCAGAAAAATTTAACTAGTAGAAATTTATAAAATAACTTTTGCATTTTCAAAGATTTTAGCCTGTG
ATATGTACTGATAATGAGTTACCTTCATGCCTGCTGTCTTTACTAAAGAAAAAAACACAAAATTTGACCAAGTTGGATATGCCTCATAATATATATAGGT
ACATATATGACATTATAAAAAATAGCAAGAACATCAACAAAAATGAATACAGCCATTATATGGATTAAATGTCCAAAAGTTATAAAATGATCAGAAGTGT
AATCACAATGGTGAAATAGAGTTTTATTTAAGAGAATCCTGAGATGTTTTAGAATAGCATGTATGTGTGTGACAGGGTGTGGGGGAGGCACTGAGACTTT
GGAGGATGAGTGGCTAAAGACTTTTTTGGGCATACTGAAAAAAATGGAAAAAAATGGAGCTTTGACCCTGATTAATATAGTACGATAGGAATGCTCTTTA
CCACTTATAAATCAACAGCGAATGATGGATGCAACCTTATATCGAATTTGCTTTGAATCCTTGTAACATAGCAGCAGGCTTGCTATCTTTGGTCTGTAAG
TTGTACCTATATGTTCTTCTCTATGGAGGGAGAAAGAGGAGATTGTGCTTTATTTCTTCCCGCTGGGTTGTCTCCATGGGTGGATTCCCCAGCCACTACA
TCATCCACATTAAAGGGTCGTGATAGACTACTATTGCTGGGGGTAGTTGTGGAGGTTGTTTACTGCAATGTACTCATCTCAACCAAAAGAAAACATGCAT
GCACGTACACACACACACACACACACACACACACACACACTGCTGAAAAAGGTTTAATCAACAATTTTCTAAAAAATGGTGGTAAGAAACACATGACCTA
AAATTTACCATCTTAACCATTTTAAGTGTGCAGCTCAGTGGTGTTAAGTATTTTCGCATTGTTTCGCAACAGATCTCCAGCACTTTTTATCTTGTAAAAC
GGCAACTCTGTATCCATTGAACAACTCCCCATTTCCCCCTCCCCTCCAGTTCCTGGAAACTACCATTCTACTTTTTGTTTCTATGAATTGGATTCCTTTA
AATACTTCATATAAATGGAATCATACAGTATTTGTCTTCTATGACTGGCCTATTTCATTTAGCCTAACGTCCTCAAGGTTCACCAGTGTTGTAGTATGTA
ACAGGATTTCCTTCTTTTTTAAGGCCAATAATATTCCATTGTATATATATACCACATTTTCTTTATCCATTTATTTGTTGATGGACATTGGGTTGCATCA
ATTGGCTACTGTATGAAATGCTGCAATGAATGTGGGTGTGCACATGTCTTTGAGATCATGTCTAAGCGGCTCTTTATTCAATATTCCCGGTGAATAAATT
CAAACCAGAATGGAATGGGGAAATATCATGAAAAAGTCATCAATGTTTGTTTTAGTCTAGTGAATTCCTTTCTATTCACTACCAAAGAGTGTGGGACCTC
ACTGCCAAAATCTCTGTGTGATCCCTAAATAAATGTTTATTATGCAGAAATGCCTTTTCTTTGTTTCTCATACCACCTAAACCCATTTTCCTGTATCTCA
GCTCTTATTATTTTGGTACTTCTAAAGTTCCTGCTTTATGTCCCCCCTTTTCCTGGGGTTTGATCTTTCCTCTTGTATTAGGCAAGTTCATGGCATTCTC
TTATATTTTTGAGATTTTCAATATTCCCGTGAGTGCTCTAATACTCTACATGTGTCACTCCTGTACATGTTTATGCTCTTTTGAGTCATAGTTGTAGAGA
TAAGAAAGAAGAAAGTAGTTGGGGTTGAGGAGTAATCTTTACTCTGGTTGCAGTAAGCTCTTTCGTCTTCAGTGTGTCTAAATAGATAAGTAATGAGCGA
ATGATTGACTAAATGACATAGTGTCTTCCTGGGTTTCTGTTAATCTGACTTTTAAATTGGATGGCTAATATTAGAAAAGTATGGGAAAAAGTTGTTTATC
AAAAGAGACACGTAATTCAAGAGTTGGTACCCATATCCTTGTCTTGATTTCATACAAGACAAAAAGGTTGAAGCAGCAATGTAAGTTTGACTATGTAGAG
TCAGGATTAGGAGTTTCTTCTGTACCAATGAGGAGGTGGCAGGGCCAGTGACTAAGGCAATGGAAGTCAGCTTGGCAGGGAAGCTCAGAGAGGCACTATA
AGTCACTATTAAGTGCCACAGTGTATGACAAAAGGCAACCAAGAAAGAACAAAGAATAGGAGACCAGGACAAATAGATATGTACCAAGAGAGGTCAAAAA
GCAGGTAAGATGTTTGGATATCAGGACTGAGACACAAGCAGCAAAAACTGAGTCATGTGTAGAATTCATGGATTAATAATATTAATATTACTATTAAGAA
TTACAAGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACTTGAGGTCAGTAGTTCAAGACCAGCCTGGCC
AACATGGTGAAAACCCATCTCTACCAAAACTACGAAAATTAGCCAGGTGTGGTGGTGGGTGCCTGTAATTTCAGCTACTCAGGAGGCTGAGGCAGGAGAA
TTCCTTGAATCCGGGAGACAGAGGTAGCAGTGAGCCCAGATCGTACCACTGCACTCCAGCCTGGGCAACAAGAGCGAGACTCCATCTCAAAAAAAAAAAC
AAAACAAAATAGAAAAGAAAAGATTTCTTAATTTGTACTGGATACTGTTAAGTACTTTCCATACATTGGGTCATTCAATCCTTACTATAACCCTATGAGG
TAAGTCCTACATTTACCTTAATTTTACAAACAAGGAAACAAAGTCTCAGAGAGGTCAAATAACCTATGCAAGGACACATTCAGCAATTGAAAGAGTTGGT
TTTCAGATTCAATAATGGCTTCTGGTTGTAGGAATATATAAATTGGACTGGGGGAGTCAGGGGATAAGTAAAATGTCACTTAGCTCCCTGTAATAAGCCT
TGCAGTGCATTTCCTGGTGTGTAACGGGTATCATTTATCATTTGATCAAGATTCAGTCAATGACCTTGTTTGCATAAAGGAGATTTCAACCTAATTTCCT
GAAAATCTGGTAGTTGCTTCTGCATAATCAAACAAAAAGGAGTATAGGAGTGAAAATCTTAAGTGTCCAATTTTTGGGAGACTGTTTTCAAACACGTTCC
CAAACATAGTCCCGTACTTACCAAAACTGTCTTAAATTGTTGTTTAAAAATATTTTCACTTTAGAGAGGGATACTAGTTTTAACTGTTTTACTTTTAAAA
ATTAGAAACATCTGCCTTCTAAGCCAGGCTTTAAAAAAAGTTTTACTCTCTTATATCTGGCATAAAAGTTTTGAAAAATGAGACATTAGGACAGTGATCC
TAGACTTTAAAACGTGAGAAATAATCTCACCCTGTGAGGAGGAATTGCAAGACTGAGAATGTGGAAGGGAAAGGATTGGATGGAAAGAATTTTGGATTTG
GTACCAGAAGATGCAGGTTTATTTTTGTTTCCTGCTTAATCCAAACCTGAAACTGAGAATGATAATACCACATTTTCAGAGTTATTGTGTAATTTAAATG
AAATAGTGTTACACAAAATATACTGTATAAAATGTAAATTTAGTAAAGCAAATGGCAGGCATTTATTGTTGCAACCGAATTACTAATGTTGAGGCTATAT
AAATAAATCTTCAATACAACTTTTATTTTTCATACTAATAATGCTTCTATCAATTTGAAGAGTCAAGAGAAGTAGCTGGTGAAAATAAGCATAGCTTGAA
ATATGAATTGTTAGTTGGCGAAGATGGGCCAAGACATCACACCTTCTCTTGGAGACAAAGACTAAATTACAAATTCTTCCACCTGGACTTTCAGTTGTGG
GAGCTTCAAGTTTCAGAAGTAACTTCCAAGACCCACGAGAGGGAGCTCATGCACTTCTTAGGCACTACTGGTTAGCTTTTTAATATCTTATTCAAAACAG
GCAGTAGTTTGGGAGGTGAGGTGTGATGAAGAAAATGGATTAAGGGAAATAAATTCCTTCAAGAAAAATCATTGGGGAATACAAAGTTAACTCCTTTAGT
GTGGTTGAAAGTGTCTGAGAAAATTCTGGCTAGAATCCCTTTTAACCAGCTCCCTTAAAGGAAAAGTAACTGCTGCAATCATTTCCAGATTAATCTTTCT
GGCTTAACACCCATTCCAAATATTCTCTTCTTAGAAAAGAGCATTGAGAGATGATTATCCACTAATGTCATCCAACTCCACTTAGCCCAGGCTGCTTTAT
GAGATAGCTAGGAATATCACAGTTTAGGCATTTGTGATCACAGTTGAATTCAGTTAATCATCCAGAGAGCAAGAGTAGAGTAGAGGTATATGCTTACACA
TTTAACAACATGCTTATTATCTGATGTAATTCTGTGGACTGTCAGAGATGAAGAAACCAGTTGTGTGTGTGTGTTTGTGTGTGTGTGTCTGACTGAACGT
GTGTATGGTGGAGAATTGGGATGGGTAGAATGCAGCATGAAACAATGGCAGAGGGAGAGGTCCTCAGTTTTGATGTTATTCATTTTATGACGTGGCATAC
TTCTAAGGTCTACAAACATGATCCAAAAGGAGATGTCTAAAAAGAACAAACCCATCTGCATGTAAAGCAACATAGTCAATAGAAGAGACAAACTTTGGCT
ACTAGTATTTTATTATAAATATTATATTACAATTGAAAAGTAGGTACAATTATAAATCCAGTCAATGTATTGTAAGTATTAATTATTTCATGGAATGCTT
ATTTTCCAGAAAAGCTTTTTGTAAATTGAGTTGGTATCATATAAAATAGAATT

Expression



Full and truncated open reading frames discovered in TCONS_00240688

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.