Detailed information on TCONS_00244538

lncRNA-RNA interactions

Number of interactions: 114

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000227155 CD82 molecule protein coding TCONS_00244538 614 314 UTR3 Trans
ENST00000261435 NEDD4 binding protein 2 protein coding TCONS_00244538 616 313 UTR3 Trans
ENST00000309060 zinc fingers and homeoboxes 3 protein coding TCONS_00244538 654 298 UTR3 Trans
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00244538 539 292 UTR3 Trans
ENST00000327473 tumor necrosis factor, alpha-induced protein 8-like 1 protein coding TCONS_00244538 614 309 UTR3 Trans
ENST00000334197 zinc finger protein 347 protein coding TCONS_00244538 551 300 UTR3 Trans
ENST00000338977 zinc finger protein 721 protein coding TCONS_00244538 594 309 UTR3 Trans
ENST00000339732 polypeptide N-acetylgalactosaminyltransferase 15 protein coding TCONS_00244538 659 304 UTR3 Trans
ENST00000353047 cathepsin B protein coding TCONS_00244538 603 305 UTR3 Trans
ENST00000356454 sosondowah ankyrin repeat domain family member C protein coding TCONS_00244538 562 303 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00244538 539 292 UTR3 Trans
ENST00000399322 diacylglycerol kinase, beta 90kDa protein coding TCONS_00244538 571 299 UTR3 Trans
ENST00000410023 interleukin 1 receptor, type I protein coding TCONS_00244538 564 293 UTR3 Trans
ENST00000421422 zinc fingers and homeoboxes 3 protein coding TCONS_00244538 654 298 UTR3 Trans
ENST00000511480 NEDD4 binding protein 2 nonsense mediated decay TCONS_00244538 616 313 UTR3 Trans
ENST00000552918 spermatogenesis associated, serine-rich 2 protein coding TCONS_00244538 595 283 UTR3 Trans
ENST00000553127 spermatogenesis associated, serine-rich 2 protein coding TCONS_00244538 628 300 UTR3 Trans
TCONS_00004721 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 novel protein coding TCONS_00244538 616 308 UTR5 Trans
TCONS_00008758 flavin containing monooxygenase 4 novel protein coding TCONS_00244538 578 300 UTR3 Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00244538 693 297 UTR3 Trans
TCONS_00011236 solute carrier family 35, member F3 novel protein coding TCONS_00244538 607 299 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00244538 606 307 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00244538 705 307 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00244538 705 307 UTR3 Trans
TCONS_00034642 CD82 molecule novel protein coding TCONS_00244538 614 314 UTR3 Trans
TCONS_00034643 CD82 molecule novel protein coding TCONS_00244538 614 314 UTR3 Trans
TCONS_00037377 NAD synthetase 1 novel protein coding TCONS_00244538 623 299 UTR3 Trans
TCONS_00047135 ubiquitin specific peptidase 28 novel protein coding TCONS_00244538 607 288 UTR5 Trans
TCONS_00050195 FYVE, RhoGEF and PH domain containing 4 novel protein coding TCONS_00244538 615 302 UTR5 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00244538 628 300 UTR3 Trans
TCONS_00050741 spermatogenesis associated, serine-rich 2 novel protein coding TCONS_00244538 517 235 UTR3 Trans
TCONS_00053503 anoctamin 4 novel protein coding TCONS_00244538 609 298 UTR3 Trans
TCONS_00053513 anoctamin 4 novel protein coding TCONS_00244538 609 298 UTR5 Trans
TCONS_00053851 transmembrane protein 263 novel protein coding TCONS_00244538 609 298 UTR5 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding TCONS_00244538 651 291 UTR3 Trans
TCONS_00065859 ubiquitin specific peptidase 12 novel protein coding TCONS_00244538 638 304 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding TCONS_00244538 623 303 UTR3 Trans
TCONS_00075827 forkhead box N3 novel protein coding TCONS_00244538 632 308 UTR3 Trans
TCONS_00075840 forkhead box N3 novel protein coding TCONS_00244538 653 307 UTR3 Trans
TCONS_00075841 forkhead box N3 novel protein coding TCONS_00244538 653 307 UTR3 Trans
TCONS_00075917 ribosomal protein S6 kinase, 90kDa, polypeptide 5 novel noncoding TCONS_00244538 616 290 noncoding Trans
TCONS_00090929 nucleoporin 93kDa novel protein coding TCONS_00244538 598 299 UTR3 Trans
TCONS_00090939 nucleoporin 93kDa novel protein coding TCONS_00244538 598 299 UTR3 Trans
TCONS_00090941 nucleoporin 93kDa novel protein coding TCONS_00244538 598 299 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00244538 610 296 UTR3 Trans
TCONS_00101152 myosin phosphatase Rho interacting protein novel protein coding TCONS_00244538 615 303 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00244538 545 294 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00244538 615 303 UTR3 Trans
TCONS_00101175 myosin phosphatase Rho interacting protein novel protein coding TCONS_00244538 615 303 UTR3 Trans
TCONS_00107851 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00244538 647 298 UTR5 Trans
TCONS_00107864 transient receptor potential cation channel, subfamily V, member 1 novel protein coding TCONS_00244538 647 298 UTR3 Trans
TCONS_00109814 lincRNA novel protein coding TCONS_00244538 555 288 UTR3 Trans
TCONS_00114623 glutamine rich 2 novel protein coding TCONS_00244538 624 300 UTR5 Trans
TCONS_00114628 phosphoribosyl pyrophosphate synthetase-associated protein 1 novel protein coding TCONS_00244538 624 300 UTR5 Trans
TCONS_00140732 NCK adaptor protein 2 novel protein coding TCONS_00244538 625 290 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 594 306 UTR3 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 675 297 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 594 306 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 594 306 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 594 306 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 675 297 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00244538 594 306 UTR3 Trans
TCONS_00144404 miRNA novel protein coding TCONS_00244538 509 300 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding TCONS_00244538 653 302 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00244538 633 306 UTR3 Trans
TCONS_00150627 UDP-glucuronate decarboxylase 1 novel protein coding TCONS_00244538 601 303 UTR5 Trans
TCONS_00150696 septin 10 novel protein coding TCONS_00244538 605 296 UTR3 Trans
TCONS_00161482 BTB and CNC homology 1, basic leucine zipper transcription factor 1 novel protein coding TCONS_00244538 621 312 UTR3 Trans
TCONS_00163367 runt-related transcription factor 1 novel protein coding TCONS_00244538 626 308 UTR3 Trans
TCONS_00165341 TTC28 antisense RNA 1 novel protein coding TCONS_00244538 637 290 UTR5 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding TCONS_00244538 640 287 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding TCONS_00244538 640 287 UTR3 Trans
TCONS_00171146 F-box and leucine-rich repeat protein 2 novel noncoding TCONS_00244538 637 309 noncoding Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00244538 651 308 UTR3 Trans
TCONS_00184373 neutral cholesterol ester hydrolase 1 novel protein coding TCONS_00244538 607 309 UTR3 Trans
TCONS_00185516 transcribed_unprocessed_pseudogene novel protein coding TCONS_00244538 619 285 UTR5 Trans
TCONS_00185519 transcribed_unprocessed_pseudogene novel protein coding TCONS_00244538 619 285 UTR3 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00244538 610 301 UTR5 Trans
TCONS_00186316 KIAA0232 novel protein coding TCONS_00244538 630 301 UTR3 Trans
TCONS_00187165 NEDD4 binding protein 2 novel protein coding TCONS_00244538 616 313 UTR3 Trans
TCONS_00190499 palladin, cytoskeletal associated protein novel protein coding TCONS_00244538 645 309 UTR3 Trans
TCONS_00190504 palladin, cytoskeletal associated protein novel protein coding TCONS_00244538 645 309 UTR3 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00244538 600 285 UTR5 Trans
TCONS_00190999 zinc finger protein 721 novel protein coding TCONS_00244538 621 290 UTR3 Trans
TCONS_00191796 G protein-coupled receptor 125 novel protein coding TCONS_00244538 607 302 UTR5 Trans
TCONS_00191797 G protein-coupled receptor 125 novel protein coding TCONS_00244538 607 302 UTR3 Trans
TCONS_00192163 amyloid beta (A4) precursor protein-binding, family B, member 2 novel protein coding TCONS_00244538 533 294 UTR3 Trans
TCONS_00196475 F-box and leucine-rich repeat protein 7 novel protein coding TCONS_00244538 605 307 UTR3 Trans
TCONS_00198039 hexosaminidase B (beta polypeptide) novel protein coding TCONS_00244538 554 301 UTR3 Trans
TCONS_00200901 GM2 ganglioside activator novel protein coding TCONS_00244538 665 285 UTR3 Trans
TCONS_00200902 GM2 ganglioside activator novel protein coding TCONS_00244538 665 285 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding TCONS_00244538 620 301 UTR3 Trans
TCONS_00204911 erythrocyte membrane protein band 4.1 like 4A novel noncoding TCONS_00244538 673 302 noncoding Trans
TCONS_00204916 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00244538 673 302 UTR3 Trans
TCONS_00211163 opioid growth factor receptor-like 1 novel protein coding TCONS_00244538 653 303 UTR3 Trans
TCONS_00211226 antisense novel protein coding TCONS_00244538 628 302 UTR5 Trans
TCONS_00213191 tubby like protein 4 novel protein coding TCONS_00244538 619 302 UTR5 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding TCONS_00244538 635 298 noncoding Trans
TCONS_00226753 cell division cycle associated 7-like novel protein coding TCONS_00244538 684 309 UTR3 Trans
TCONS_00233718 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 novel protein coding TCONS_00244538 647 304 UTR5 Trans
TCONS_00235393 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) novel protein coding TCONS_00244538 623 300 UTR5 Trans
TCONS_00237101 cathepsin B novel protein coding TCONS_00244538 603 305 UTR3 Trans
TCONS_00237103 cathepsin B novel protein coding TCONS_00244538 603 305 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding TCONS_00244538 581 233 UTR3 Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00244538 636 290 UTR5 Trans
TCONS_00243136 glioblastoma down-regulated RNA novel protein coding TCONS_00244538 548 285 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00244538 607 310 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00244538 607 310 UTR5 Trans
TCONS_00243503 proprotein convertase subtilisin/kexin type 5 novel protein coding TCONS_00244538 601 302 UTR3 Trans
TCONS_00243507 proprotein convertase subtilisin/kexin type 5 novel protein coding TCONS_00244538 601 302 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00244538 611 296 UTR3 Trans
TCONS_00247616 unprocessed_pseudogene novel protein coding TCONS_00244538 548 285 UTR3 Trans
TCONS_00247617 unprocessed_pseudogene novel protein coding TCONS_00244538 548 285 UTR3 Trans
TCONS_00252827 discs, large homolog 3 (Drosophila) novel protein coding TCONS_00244538 628 300 UTR5 Trans

Sequence

>TCONS_00252827 (4406 nt)
CATTTACATGAAAAGGGATTTTTAAAAGTTTCCTCTATTCCTTACTCCCCACTCAGTGCTGGTTAATTAACCAATCATAAAGAAAAGATGAAAGTATGTG
AACCTCAAATCCTTGTGTTCTGGAAAAAAAACATACTCACAGAATAATGAAAAAAAATTTCAACTAATGAGAACCAGGAACAATGACCACTGGAAATAAT
GAAAACAGTTGGATCAAACAGGTAAAAACTTCACAGAAAATTAGCAGTGCATTGGTCTGGCTTTGCTTCTGTGTCTCCTTAAGGCCTATGTCTTGGTTGG
ATGACTTATTGGTGGGAGCAGAGGGGAGCTCTTTTCTTCAGAGTACATGGTTTAAATGTTCTTTCAACTTTGTTGGCTAACAGGTTGTTTAATATGCCTT
TTCACCTGGCTTCCATCTCTTTACATACATATTTAAAGTCCCTGCCTTCTGCTGCAGTCCACCATCTTGAAACAGCCTGTCCCTTATTCAGCCAGCACAG
ACACTCCAACCTCCCTGATATTGCATAGCAGGGAGATGAGGTTTAGAGTTGTATGACTTTCTTGACTTGGAAGAGGAACTGGATTTGTTCCATTTTAAAT
GCTGCTTGTGGCAGTCTATGGCAGGCAAAATTTTGTCCTCTTTCTAGGTATTAGGACGGGATAAATTCTCCAGCCTTCTTTGCAGTTAGGTTGGGGCTTG
CGCTGGAGTTCTTGCCAATGGAATGTGCACAGAAATGATGTCCACTAGTGGTTCTCACGCTACAGTGTGTATAATGAGTCATCCCATCACTCAGGGATCT
TGTTGAAATGCAGATTCTGATTCAGTAGGTTTTGGGTGAGGCCCATGATTCTGCACTTCAATAAGCTCTTAGTTAATACCAGTGCTGCTGGTTTTATGGA
CAACACTTCAAGTAGTAAGAACGTACACCAATTCCAACTTGGCCATAAAATATCATGTGCAGTCTTCCAAGATTTCTCTGCTTTATCTGTACAGCTACAA
GTAAAGCACTTGGAATGGTAGAGTGCTTCCCTCAATGGATGGAAGGAGACTGGATCCCTCTGACACTGACTGGAAGAGCTCTGCTAAGCAAAGCTGCGAG
CTCATGAAAGACTGTGAGGAGAGTAAGAGGTAACCTTTTATTGTGTTAAGTCATTAATGTCAGGGTTTACTTGTTACTACAGCATGGCTTCCTCTAACAC
CTCCTCTTATCAACTGCCTTTTCTGAGTCTTTCCTTGACTCATGATTTTGAGTTAACTTAGTAAACTTACCAAAGGCTGACTTTGCACCAAGAATCATTA
TAGGTACTGGAAAATTTAAAAGATGAAGGAGGTGGAGTCATTTTTTCCTAAGGAGCTGGGAGAGGAGATAAGAAATGGGATCAAATAATGAACAACAAGT
TTCAAAGGGATCAGAGTCCAATAAAACCTGCCGCCTGAGCTCTTAAGAGAGAAATGGAAATCGTAGTTGTGAACATCAGGCTTTCTAGAAGTGGCTGTAC
CAACATCAGCCTTGAAAGAGCTCAATCCAGCAGATCCTGTCCCACTTGGAACCTGGCTATGAGTGAGAAAACATCTGTGGTTGGAAAATGGGGCTGGTGA
TTCAGGCCTGTTTGGGAAGAAGATGCTCTTGAATGCTTTGCTCAACAAACACCTCCCTTCTGCAAGGAGGTGAGAGGTCATCTGTCTGTCTACTTTGACA
CTTTCACCCACTGAACTTCAGGGCTTAAGACACCTTCCCCATAAATTGGAGTGAGCGCGGCACAAACTGTCCCTGAATTTGACCATAACTGACTCACCAA
AGGTCTGAGTAGGGGAGAAGGCAAAAACAGACAAACAGGCACTGAGGACTTTGCCATCCCAGACCTGTGTCATGTAAACAGGCTGTCTGCTTCACAGCCA
AGGAATGAGCCCTGGACGTGGGTCGGAACTGGAGCCTTAACAGCTAATACCCAGAGCCTTTGACTGTGGACGACTGTGTTCAAAGGGGCAGGCTGCCCAC
TACTAGGGCATGGAGGAGAGGCAGGATGTGGGGAAAGAGTGTGGTTTTGGAATCAGACACAACTGGTCCCCGCCACTTACTCAGCCTTGTGACCTCAGAT
GAAAAAGTCTCTTATTCTTACTAAGGCTCAGTTTCCCCAACTGTGAAACTGACATAACACTATGGACTTCAAAAGGCTTTACAAGCAAAACAATTTATAA
AACAATTTATTCAACAATTTATTCAGGCACTTAGCACAGTGCTAGCACATAGATATAAGTAACAGTTTTTTTTCTCTGTTCCTTCTACGTGGAGGAGAGG
CATCTGTTGTCTCTTCAAGTTAATTAATTTGAAAATATCCAGTAGCAACCATTTCTTAAATTCCTCTTACGAGCCATTTAGTTTTGCAACAACTGCAAGA
TAGACAGTATTATTCCCATTTTACAGATATGGACATTGAAGCTCAGGAGGTACACCGGATATAGTGACTTTGATCTTCTCATTGCCCTGACACTGATGAG
AGAGAGATAACAAAATCAAAAAGAACAGTTGGAGGAATAAATGTCAAATATAGGAGGCTGGAAGCATAGTCTCTAACCTCAGTCTAGCCTCGGATAATAG
CATTTTCATCTTGCTACAGCAGTAGCAGACACCAGCTGGGTGCCTTCTCCCTATTTTATTCATTTGTATGTTCATTGAGCAATTTATCTATTGCTAATTC
CTTAGCAAGCATTTACTGTGACCTTCCTTTTATTATTACTATTATTATTATTCATTTTAGAGACAGGGCTATGCCATTATGTTGCCTACGCTGGAGGGCA
GTGGTTATTTACAGGTGTGATGCCGCTACTGATCAGCATGGGAGTTTTGACCTGATTCATTTCTGATCTGGGCCCATTTGCCCCTCCTTAGGCAACCTGT
GATGCCCCACTCCCAGGAAGTCACTGTATTGATGCTGAACTTAGTGTGGGCACTTCATGGGCACAGCACACTACAGCCCAGAACTCCTGGGCTCAAGTGA
TCCTTCCACCACAGCTTTTCCAGCAGCTGGGACTACAGGTACATGCCATTGTGCTCAGCTACTGTGTACTTCCTATGTCCTCAAATCCTGCTACTCAAAA
CATAATTCCTAAGCCAGAAGCATCAGCATCACTGAGAGCTTATTAGAAATGCTGATTCTCAGGCCTAACCTCGGACCAACTGAACCAGAGAATCTGCATT
TTAACAAGATCCCTGGGTGATTCACAGCATATATGAAAGATTGAAAATTGCTATCCTTGATGCTTTTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTC
ACTCTGTCACCAAGGCTAGAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCCGCCTCCCGGTTCAAATGATTCTCCTGTCTCAGCCTCCCAAGTAGC
TGGGATTACAGGCACGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCCGACC
TCAGGTGATTCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAACCACCACACCTGGCCTCCTTGATGCTTTTCTATCTTGGTGAAATACT
TATTGGGAGGACTCCCAGTACTGCTACCTTCCTTATTGTGAGTAGAAAAAAACTGAAAAAGTCAAAGTGTTTTTTCAATTCTCTCACTCAACAATAATCA
CCACTGAAGACTCCTGTGACCAACTCTGTGGGGATTTCTCCTCACCAACAAGCAGTCAGTTCTGTAGCAGACACCAGCTGGGTACCCTCCAATCCAATTC
AATTCTGATGTTACCTACCTGGAGGTAGCGTCAGATGCCACAGGTTGAGGGCTCAGTCCCACGTGACTGCCCCTAACTTATGATACCAGTCAAAAGCCCC
AGGTTGTTTTATTTGTGCTTCTGACTGACCGTCTATAAGTCAGGGATCCCCTGAACCCCTTTTTGTGTGTGATTAATTTACTGGAGCAGAGCTTACAGAA
CTCAAGGAAACACTTAACATTTACTGGTTTATTATTGTATTAGTTCGTTTTCATGCTGCTAATAAAGACATACCTGAGACTTGGTAATCTATAAAGGAAA
GAGGTTTAATGGACTCATGGTTCAGTTCCACATGGCTGGGGAGGTGTCACAATCATGGCAGAAAGTGAAGGGGAAGCAAGACATGTCTTGCATGGTGGCA
GGCAAGAGAGACAGCATGTGCAGGGGAACTGCCCTTTATAAAACCATCAGCTCTCATGAGACTTATTCATTATCATGAGAACAGAATGGGAAAAACCAGC
CCCCATGATTCAATTACCTCCTACCAGGTCCCTCCCATGAAACGTGGCGATTATTACAAATTGAGATTTGGGTGGGGACACAGCCCAACCATATCAGTTA
TAATGGG

Expression



Full and truncated open reading frames discovered in TCONS_00252827

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.