Detailed information on TCONS_00247818

lncRNA-RNA interactions

Number of interactions: 29

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000280154 programmed cell death 4 (neoplastic transformation inhibitor) protein coding TCONS_00247818 550 300 UTR3 Trans
ENST00000330676 TLC domain containing 2 protein coding TCONS_00247818 631 298 UTR3 Trans
ENST00000424496 sense_intronic sense intronic TCONS_00247818 512 291 noncoding Trans
TCONS_00009834 SRY (sex determining region Y)-box 13 novel protein coding TCONS_00247818 606 296 UTR3 Trans
TCONS_00023682 pre-mRNA processing factor 18 novel protein coding TCONS_00247818 601 297 UTR3 Trans
TCONS_00023685 pre-mRNA processing factor 18 novel protein coding TCONS_00247818 601 297 UTR3 Trans
TCONS_00023687 pre-mRNA processing factor 18 novel protein coding TCONS_00247818 601 297 UTR3 Trans
TCONS_00023689 pre-mRNA processing factor 18 novel protein coding TCONS_00247818 601 297 UTR3 Trans
TCONS_00030588 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00247818 533 298 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00247818 603 299 UTR3 Trans
TCONS_00030592 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00247818 603 299 UTR3 Trans
TCONS_00043422 vacuolar protein sorting 37 homolog C (S. cerevisiae) novel protein coding TCONS_00247818 623 302 UTR5 Trans
TCONS_00057601 transcribed_unprocessed_pseudogene novel protein coding TCONS_00247818 612 293 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00247818 609 297 UTR3 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00247818 638 297 UTR5 Trans
TCONS_00147093 ATPase family, AAA domain containing 2B novel protein coding TCONS_00247818 632 296 UTR3 Trans
TCONS_00194652 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00247818 606 286 UTR5 Trans
TCONS_00194655 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00247818 606 286 UTR5 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00247818 626 297 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding TCONS_00247818 576 297 UTR3 Trans
TCONS_00235205 epithelial splicing regulatory protein 1 novel protein coding TCONS_00247818 608 300 UTR3 Trans
TCONS_00235219 epithelial splicing regulatory protein 1 novel protein coding TCONS_00247818 608 300 UTR3 Trans
TCONS_00235231 epithelial splicing regulatory protein 1 novel protein coding TCONS_00247818 608 300 UTR3 Trans
TCONS_00240685 metastasis suppressor 1 novel protein coding TCONS_00247818 535 233 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00247818 602 305 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00247818 602 305 UTR5 Trans
TCONS_00243503 proprotein convertase subtilisin/kexin type 5 novel protein coding TCONS_00247818 539 298 UTR3 Trans
TCONS_00243507 proprotein convertase subtilisin/kexin type 5 novel protein coding TCONS_00247818 539 298 UTR3 Trans
TCONS_00247058 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 novel protein coding TCONS_00247818 609 289 UTR3 Trans

Sequence

>TCONS_00247058 (3700 nt)
ATTCACTATTTATGATTGAATGATTATCATATTAAAGAGGTGAGAAAATAAAAATAAGTCTGATGTGCACAAAGCCATACTGCTCAAATTGTTTGATAAT
ATCTGTTAATTAAATTATTATGACATCGGTAGAAGAATGATGTTTTGTTTATATGTGGTTAGAATTGGTCTTTTTTAAAGGAAATAACAAGAGAGATGGA
AATGGAATGGGTATAAATAGTAAAAGGTTCTATCACTATAATTCCCTTTTGCTCTAAATAGTTAAAGCTTCTATCACTATAATTTCCATAAGAAGATATA
TGTGTTTACCTGTTAATTTTATCAGGGCAAATTAAAACATGGATAGAATCATGTTTCTCAGTGTGAAGAAATATTTTTATTTGATGAATATTATATATTT
TCAGGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAATTAGGGAGTGATATTTACCTTGATGGTATCATAACTATTGTGGATTCAAAATATGGATTAA
AAGTGAAATACCACTAAAGGCAGAAGAGAATGAAATCATCCCACCCACTGACCCGTTCCCAATCTGAGCATATGGATAGGGCCCAAAGCAGTAAGTTCTT
AGAAGTTTAAATTCAGTGTTTAAAAATTAGTGTCTGTTTTGTATCCAACCTCATATCTGAACGTGTTAATTTTTTTTTTTTTTTGAGACAGAGTCTCACT
CTGTTGCCCAGGCTGGAGTGCAGTGGCACCATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCCCTTGTCTCAGCCTCCTGAGTATCTG
GGATTACAGGTGCACACCACCATGGCCAGCTAATTTTGTATTTTTAGTAGAGACAGGATTTTACCATGTTGACCAGCCTGGTCATGAACTCCTGACCTCA
AGTGATCCACTTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCGGCCTGAACTTGTTAATGTTTAAGTTTGCTTTTTTTTCC
CAAATCTTTGCTGAAATTATGCTCTAAGGGGATATGTCAGGTTTGTCAAATAGCTACCAATACCTCTTCACTGGGCCTTCTCTCCCTCGTTGATAGAGTG
CCCTAATTTGAAAAGTTTGGAAGAAAACTCCTTTTTTAGAGTTTAAAATCTCAATTTATGAATTTATGAATATAATTTAAGAATCAAAGAATGATCCCAA
ATACAGTATTACAGTTTCACGCAGAAAAATTCCAATGACTGTTGGAAATCATATTTCTTGCAAAATGCTTATGGAGGTAGCAAAAAAGCCCCAAATTATT
CATTTTGAATGTTTATTATAGGCATGTTTGAATCTACCTCTTCCATAAATTAATTACAAAATTTGATATACCTATGTGACAGATAACTGCTAAGACATTT
TGTTTTTTTTTTTATTTTGATAAACTGAAAATGCCATGCTAAAAGTCAAACTGTTTATGTATTTTATGATTATAGGAAAAATTTTATATGTATAGTTGGG
TATGGAGAAGAGTTAAATAGAATCTATTATCAGCATGATGGAGGCCAAAAAAACAAAGCAACATTCTGAATAATGCAAACACAGTAAACGTTTAACCTTC
TGCTACCTTGATAAAACCTCTTAAATTATTAAATCAATATACCTACACAAAACTGACACACTGTCAGGATAATGGAAACTTTAAATTTTCTAAGTCGGAT
GCCAGATAAATAACTTTGCCTTGATATAAAGAATTTTCCAACTTGTCCAATTCCTCTGGTTGCAAAGCTTGACCTCAGTAGCTGCTTGTGATTCAGAGAA
TTCTGAGGCAGTACAAGTAATGACACTTGGATAATGGGCAGCAATTTAAGAATGTCATGCTTCACAGAGCCAGCCCATGACAAGTAAAGCTGAGAAATGG
TACCCTGTGGCCAGCCAGCCAAATTGAAACTGAAGTGGTAATTGATATCATGGGGTATCACTCTAATGGGATTGTCACCCATTGATCTGAAATATTCATT
TTTTAATCATAGGCAAAGAATTGGACAACTTAAAATGACAGCTCTCTATTCTGAGGACTTGACACCCGGGCTACTGACATTGTTCTTTTCAGTTCTACAA
ATGTGACAGCATTTAATGCAATAGAAGCAATGAATGAAGTTACCCAGAGAAGGTCAAGTGAGAGGTTTCTTCTTGGTTCCTCTGTTATGTTGCACAATCT
GTTGAAACAATTCAGTCAGAAAACAGTTAGCTTGGAAAAGGCCAGAACAATAAATAGACTGACATTATGCAATAATTTTTTAAAAACTAAAATAGTGTTA
CATCTGTAACCAATCCATTTGAAAGAAATAGTTCCTGCTGCTGCTTTTTAAAAATGACACCAGACATCTTTGACACTAGATTTATTTCCACTCTGGTCAA
CAGCAGTGTTCTTTCATAGCCAGTGGGTTTTAAGACAGTTTTTTCTTTTCTTTCTTTCTCTTTTTTCGGTCCGGCTTCTTTCTTTATTTCTGCAGAAAAG
GACACCCTATAGCCCTTCATGAAGTTAGGTCTACAGTGGTGTTATTTCAGAGAGTTCCTTTGTTTCTCTCCCTAACCCCCCAGCTTTATTGAGGTATAAT
TGACAAGTAAAAACTATATATATTTAAGGTATACAGTGTGTGAATTACATTATCAAACAATCGAGCTAGTTAACCTATCCATCACCTCACATTGCTATTT
TTTTGAGAGGGGGTGGTAAGAACAATTAAGATCTATGTTTTAGCAGATTCAAGTATACAATAGAATTAACTACAGTCATCATGCTGTAATTAGCTCTCCA
TGACTTATGCATCTTGTATAACAAACTTTGTATTCTTTGACCAACATCTCACACCACTCCCCTTTAATTTCCTTTGTTTCTTGTGGTAAGTTAAATTGGG
GTTTTGATCCTTAGCCTTTTGAATATGTTGGATTAATTAGTATCAAAATTATTTTTGTCTTTTTTGATATATAAGCAAAAGCCATAGTTGTTAAGCAGAG
ATAAGGAATACTTTGGACATCTATGTAATATAAAATATTTAAAAAATATTTTGCAAATTTTTTTTCTTCATTTACTTATACAGGTGGAATACAATGCCAA
ACTTTCCATTTTGTTTTATTTTATAAATGAAAGTCATCTGACTTAATGACCAAATGGTATATAATGTATTATTGGAGAATGTTCTTTTGAATAGAAGACA
TTGATTTTATACTTTTTGCAGAGTTTGACTTGGGAAGGTAGGAAGTCACATGAGGGAAATGCAGGGCTGATGTCTAAAGAAAATAAATGTTAATATGCAC
TTATTTTTTTAAATGTTTGTATAGCTTTCCTATGGGCATAGAAGAGGACATTTATCTCTTCTGCTATAATTGTATATGATTACATATAATTTTAATACAG
CTGTAAATATTGGCAGGCTCTCATTTGGGGTGATTTTCATTTATTTTTATATTTGATACTTTCTGACTGCCTGGAAGTAGTAAAACGTTAGTCTACCACT
GTTAGCTTTGAGTGAAGAATTCTAATATTTTGGAGAGGTAAATGCATTTAAAACATTGCACATTACCTTGTGAAACTAACATTGTATTAGTTACATTTAG
GCATGGAAATGCAAAAACAAATCTGTAATTCTTCTGTCATATCATTTTTATGCCTCACAAACTCATAGCCAGATAACCCCAATTTCATATGTTAAAAAAG
C

Expression



Full and truncated open reading frames discovered in TCONS_00247058

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.