Detailed information on TCONS_00254514

lncRNA-RNA interactions

Number of interactions: 56

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000257696 hypoxia inducible lipid droplet-associated protein coding TCONS_00254514 563 308 UTR3 Trans
ENST00000323699 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00254514 516 268 UTR3 Trans
ENST00000375290 patched 1 nonsense mediated decay TCONS_00254514 500 300 UTR3 Trans
ENST00000379565 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein coding TCONS_00254514 619 309 UTR3 Trans
ENST00000391877 delta(4)-desaturase, sphingolipid 1 protein coding TCONS_00254514 516 268 UTR3 Trans
ENST00000409359 Rho guanine nucleotide exchange factor (GEF) 4 protein coding TCONS_00254514 558 284 UTR3 Trans
ENST00000439138 transmembrane protein 98 protein coding TCONS_00254514 545 266 UTR5 Trans
ENST00000478730 ORAI calcium release-activated calcium modulator 2 protein coding TCONS_00254514 615 306 UTR3 Trans
ENST00000513000 inositol polyphosphate-4-phosphatase, type II, 105kDa protein coding TCONS_00254514 512 262 UTR3 Trans
ENST00000543196 polypeptide N-acetylgalactosaminyltransferase 6 protein coding TCONS_00254514 604 304 UTR3 Trans
ENST00000592474 phosphoribosyl pyrophosphate synthetase-associated protein 1 retained intron TCONS_00254514 609 290 noncoding Trans
ENST00000593250 centrosomal protein 76kDa nonsense mediated decay TCONS_00254514 609 268 UTR3 Trans
ENST00000620139 melanoregulin protein coding TCONS_00254514 599 309 UTR3 Trans
ENST00000621141 G protein-coupled receptor 1 protein coding TCONS_00254514 523 287 UTR3 Trans
TCONS_00030591 cytoplasmic polyadenylation element binding protein 3 novel protein coding TCONS_00254514 566 298 UTR3 Trans
TCONS_00033132 dynein heavy chain domain 1 novel protein coding TCONS_00254514 613 293 UTR3 Trans
TCONS_00039117 nicotinamide N-methyltransferase novel protein coding TCONS_00254514 591 298 UTR3 Trans
TCONS_00041296 RIC3 acetylcholine receptor chaperone novel protein coding TCONS_00254514 630 305 UTR5 Trans
TCONS_00041298 RIC3 acetylcholine receptor chaperone novel protein coding TCONS_00254514 630 305 UTR5 Trans
TCONS_00051891 RNA binding motif, single stranded interacting protein 2 novel protein coding TCONS_00254514 597 308 UTR3 Trans
TCONS_00056991 epidermal growth factor receptor pathway substrate 8 novel protein coding TCONS_00254514 531 283 UTR3 Trans
TCONS_00065864 long intergenic non-protein coding RNA 412 novel protein coding TCONS_00254514 624 305 UTR3 Trans
TCONS_00095053 epithelial membrane protein 2 novel protein coding TCONS_00254514 558 299 UTR3 Trans
TCONS_00101169 myosin phosphatase Rho interacting protein novel protein coding TCONS_00254514 512 299 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00254514 623 309 UTR3 Trans
TCONS_00117136 CBP80/20-dependent translation initiation factor novel protein coding TCONS_00254514 560 303 UTR3 Trans
TCONS_00119478 zinc finger and BTB domain containing 7C novel protein coding TCONS_00254514 612 315 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00254514 615 314 UTR5 Trans
TCONS_00124891 zinc finger protein 540 novel protein coding TCONS_00254514 605 303 UTR5 Trans
TCONS_00137691 FOS-like antigen 2 novel protein coding TCONS_00254514 603 306 UTR5 Trans
TCONS_00141667 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00254514 524 306 UTR3 Trans
TCONS_00141670 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00254514 524 306 UTR3 Trans
TCONS_00141673 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00254514 524 306 UTR3 Trans
TCONS_00141679 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00254514 524 306 UTR3 Trans
TCONS_00141681 Rho guanine nucleotide exchange factor (GEF) 4 novel protein coding TCONS_00254514 524 306 UTR3 Trans
TCONS_00148048 potassium voltage-gated channel, subfamily G, member 3 novel protein coding TCONS_00254514 624 303 UTR3 Trans
TCONS_00148450 coiled-coil domain containing 88A novel protein coding TCONS_00254514 621 301 UTR3 Trans
TCONS_00150696 septin 10 novel protein coding TCONS_00254514 601 297 UTR3 Trans
TCONS_00165715 LIM domain kinase 2 novel protein coding TCONS_00254514 582 288 UTR3 Trans
TCONS_00165721 LIM domain kinase 2 novel protein coding TCONS_00254514 582 288 UTR3 Trans
TCONS_00174643 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4 novel protein coding TCONS_00254514 561 316 UTR3 Trans
TCONS_00194686 E74-like factor 2 (ets domain transcription factor) novel protein coding TCONS_00254514 620 293 UTR5 Trans
TCONS_00195633 aspartylglucosaminidase novel protein coding TCONS_00254514 569 284 UTR3 Trans
TCONS_00195828 LRP2 binding protein novel protein coding TCONS_00254514 624 304 UTR5 Trans
TCONS_00199319 sorting nexin 24 novel noncoding TCONS_00254514 622 306 noncoding Trans
TCONS_00200709 adrenoceptor beta 2, surface novel protein coding TCONS_00254514 598 288 UTR3 Trans
TCONS_00202516 family with sequence similarity 173, member B novel protein coding TCONS_00254514 607 292 UTR3 Trans
TCONS_00204896 erythrocyte membrane protein band 4.1 like 4A novel protein coding TCONS_00254514 647 309 UTR5 Trans
TCONS_00210928 leucine rich repeat containing 1 novel protein coding TCONS_00254514 598 312 UTR3 Trans
TCONS_00213738 enoyl-CoA delta isomerase 2 novel protein coding TCONS_00254514 635 306 UTR3 Trans
TCONS_00216910 high mobility group nucleosomal binding domain 3 novel noncoding TCONS_00254514 601 299 noncoding Trans
TCONS_00240688 metastasis suppressor 1 novel protein coding TCONS_00254514 609 300 UTR3 Trans
TCONS_00240832 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 novel protein coding TCONS_00254514 574 299 UTR3 Trans
TCONS_00243477 osteoclast stimulating factor 1 novel protein coding TCONS_00254514 619 307 UTR5 Trans
TCONS_00243482 osteoclast stimulating factor 1 novel protein coding TCONS_00254514 619 307 UTR5 Trans
TCONS_00246554 endoplasmic reticulum metallopeptidase 1 novel protein coding TCONS_00254514 555 315 UTR3 Trans

Sequence

>TCONS_00246554 (4756 nt)
GGCTTTCTGAGCAGCTGCAAAATATGTTTTTAACTTTTAAGTGGAAGTTGGGGGTCACTGGCATCGAGTCTGGAACAGTCATTCTCAGCAAGAGCTCTTT
GAACTCTGACATTCTCTAGTTTTACGGACTCGGAAATGAAAGCTCATTAGCATCTACACTGAAGACGCTCCTGTTCTTCACAGCTTTAATGATCACTGTT
CCTATTGGGTTATATTTCACAACTAAATCTTACATATTTGAAGGCGCCCTTGGGATGTCCAATAGGGACAGCTATTTTTACGCTGCTATTGTTGCAGTGG
TCGCCGTCCATGTGGTGCTGGCCCTCTTTGTGTATGTGGCCTGGAATGAAGGCTCACGACAGTGGCGTGAAGGCAAACAGGATTAAAGTGAACATCACCT
TTTTATAGCATTAAATTCATTTTTTAAAATGATAAATGCTGGAGGGGGCCATCTGATTTGAATAAAGTTGAAAGAACATGTTAAAGTCAGTCTTAAGGAG
TCACGTTTGAGTATGTAAATTTTGATCTTTCTAATATGTTGGTTTGTATATTCAGTTTTAACTGTATGAATCTGATTTGCAAATGAGAATTTGGAAAAGT
TAGTTACAAAGAAATATGTTAATTTAATTAGACAATACTCTGGAAGGAATTTTATCTTCTTTCAACAAAACATGTTTTATAGTATTCTGACTTACGGTTG
CTTTTGAGTTTTACTCATTTGGATATATTAAGATGCACACAGTGAAGCAAATTAAACTCCACTTTACGCTGGAATGCTTTCTTTAGCATGAAAATACCAG
GTCCTTGGATTTGGGATTTTAATTTCCTATGGAAAGTTGCTTAAATTGTGGACACTGGAATTAATCTGAATGTCACTGAGGAATTTCACATGAAGTGTAA
TCCCTAGTCAATAAGAATTATCCATTACATTATTTTATGGGAAAACTAGGCTAAATTACATCCATTCAGGTAAAAGGACCTTAGCTTACTGAAGGATCTA
AAGAGCAAAGCAAAGATCTCACTACTCAAACACTCAGCCTGCTTCCTTCAAGTCCCCTTGCAGGCCAGCTTTGTGCTTTGCAGACCAACTTTTTAATGAG
ATACTTTGCTTCCTCATTCAACATTGAAGCTAGGCTTCAATTAAAAGGTTCGAGGAAGCTCCATTTAAAATTGTTTTTTTTACTATTTTTTAAAATTGTA
GTGTATATGATAGGAATTTGCATTTAAATATGTTCATTTTTGCATATGTTAGGAGTGGAAACAATCTGGAAAACATTTTTTTTTCATCCAAAAAGTATTC
TCCTTGGGCATATCTGATGGAAAAAAACCTTGATTTTATTTTCGTATCTTTAGTCTGTGTTCTTTCTAGTTATTTGGTACTAATTATGTGCAATCTAAAA
ACACTCCCACAAGTATTTGTTTTTTAATTATAAAATCATAGTATATGTTCTTTGTAGAAAACTGGAAAAATACATATTCAAACAGGAAAAAAAATCAAAA
TTCCCCATAATGTTGCCATCTAAAAATAACCTCTATTTTAGTTGATATCCCGTATTCATTTTTGAAAGCCATTCCTTAATGCTAGTTTGATACACACTAA
AAGTTTAGCTTACAAGTTCAAATTCTGCCAGCTTTTCCTGACAGCTATTTGCATTTTTTTCAGATGAGTGATTATTGGCCATTTTCTTTTTCTTTTTCTT
TATTTTATTTATTTATTTTTTTGAGACAGAGTTTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCTGCCTCCTGGG
TTCAAGTGATTCTCCACCTCAGCCTCCCAAGTAGCTGGGACTACGGATGCCTGCCACCACGCCTGGCTAATTTTTTTTTGTATTTTTTTGTAGAGACGGG
GTTTCACCATGTTGTCCAGGCTAATCTTGAACTTGTGACCTCAGGTGATCCACCCGCCTCGGCCTCCGAAAGTGCTGGGATTACAGGCGTGAGCTACCAC
GCCCGGCCTTATTGACCATTTTCTAAATAAGCACATTCTATCTTTATTCTCTTAAAATTCAAATTTTCTGTTACTGATAATCCTAATACTAGGATTCTTG
CTTAAGTATGTGAAACCATTACCGATTTGTTGTTCACATTTATTTTTTATGTTGTGAAACTGGACTAAAGGAATAGAGGGATGATTAGTCATAAAAGTCA
AATAGCATTTGTGTTTAACTGTTGAGAAAAGTGAAAGATCAGTATGATTATTATGGAACTGTTTTTAATTCTTGCTTAAAGACTACAATTTTAGTATAAT
GACATTTGAGTCTAGGGTAGTATGTGGTAGATTTCTAGATGGTCCCTAATTAAGAAGTATTGTTGTATTTAGAATTGTCCACCTAATTTCTTTTTATATA
ATGCCAAGGTATTTCTTGTGCTTTTGGGATCTTATGCTGTTTGTAAAATGTTACTGTCCAATGTTGGATTATTGTTTTGGTTTCAGGCATTTGCTGAATA
GGTGATGATACATGGGTATTTTTCTGCAAGTATTTAAACCAGGGGCATATGCAAAGGCAGTTGTAATTTCCTCTTGGAAAAAGCGCCAAATGTTTGAAGG
TTAAAATCAAATGCTAGGGTTGATATTTAGGCTTATAACAAAATAGGCTTGTTTTCAAAGCAGTTTTTTCCTAGAGTTTTAACTGTTAACTCACTAGTTT
GCTGCTGTTTTTAACTATGTTAAATAACATATGGTATTTGGCAAATAGATTTATTTTTCAAAATGTCTCACTAGTTTCCTTTTACACAATGTATATACTT
CAAGATGTATAGAAAGGAAAGCTACAGTTGAGCCCTTATACATGTTTTAAGGTAGAAATATGTTCCCTATTGTTTGAAAACTGATTGTAAGAATAACCTC
AGTTAGGAGATATAACTTGAAGTGTCAGTCCAAACTACTGATTTAACCCTATTTACGGTAACACATTACCTTCCTCACCTCCTGTTTGGCCCTGGAGAAT
GTAGTCCTTTTTCTCATTTGTGTTGAGAAATGAAAAGTCTGCTGTAGAATGTATCTGATGTCATTAGTTCTTCAAATGGATACCATTGTACATATAACAG
TAGAATTTGGTTTGGGGTTGTTAGTGAAAAAAAATTTAAACCTGCCATTAAAAATCCCCATGTTTCATGGAAATCTAACAGAAATACATTGTAATAATTA
GAACATTTTGTTTTCTTTTTTCTTTTTTTTTTTTTCGAGACGGAGTTTTGCCCTTCTTGCCCAGGCTGGAGTGCAAGGGCGCAATCTCGGCTCGCTGCAA
CCTCCGCCTCCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCCCCTGAGTACCTCAGATGACAGGTGCGTGCCACCACACCCGGCTAATTTTTGTATTTTTA
GTAGAGACGGGGTTTCACCATGTTAGCCAGGCTAGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCCGCCTCCCAAAGTGCTGGGATTACAGGTA
TCAGCCACCGTGCCTGGCCTAATAATTGGAACATTTTCATCATGAAAATGTCATCAGCTTTGCCAAAAGAAACAACCAATTGACTTGTTTGGCGTTTGTT
TTCCATTTTCATGTCAATTTTATGTATACAGTTAGAATACCCAAGGAGACCACTAAAATCAGTTAAACAAGTAGGGTATATACAAAGAAAGATGAAACCC
GAAAGTACATAAAAAGGATTTAAATCCGATTTTAGATGTACCTAGTGTGTATTTCTTATCTCTAGACAAGTTCATGTTTATTGTTTAATTTATGCCCAAG
TGAAGTTGTAAACTTATGGTTCAACTCTGACACAGAATTTGTCACTTGTCTGAGGTCAGTGGCAGGTTTCTCTGCTGTCAAGCACTCTGTGTCACCCACC
AGATTAGTATAACTATTAATTCAGACTGTACTCCTATGTTTAAGATAATTTTTACAAGAGCTGGCTGAAGCAGCACATTAGTAACCTGACAAGATTTCTT
TTTCCCTTTTCAGGGGGAAAGGGTCACCTTAAAAATAAATTATTTTCAGGGACTTTGGGAATCTAATGATAAATATTACACATAATCTATGAATAGCTTA
ATCCTTTATATATTCCTTAAAATAGGAATTCCTCGACATCACTCCTGGCCACACTTTCCTTGCCTGTGTTGTTGCTATGTGTATTTGAAAGTAATATCTG
CATTCCTTTTAAGATGTTCTGTAAGTCATATTTGTCAGTTATACAGAGTAGTCTTCCTTTTCCCCACGTTCAGTGTAATCTCACTGAACAGTAATAATAG
CAATAGCTAACAACATCTGCACAGCACCTTACAGTTTGCAAAGAACGTTCACACATTCTCATTTGAGTTTTGCATAGTGAACCTGTTACGAGATGTCTCT
TGACGTCGATGCTAAAAGTGTTAGAATCTTTACATCACTAGAGTCATTGAATATGCTGTAGTATTGAATAGTGCCCTGACTAGGGGGAGGATTTGGATGT
GCTGCATTTCAAGCCGTGTATAATCATCAAAATGGGGGGCTTGAGTTCTTTAGCTACTTGAATCCGATTTACTTCTGTTAAGTGATGCTTTTCTAACCGT
TTTCTGGATGGATTTTGTATTCACTATATTGTAGCTTGTAATTTGTATAAATGTACCATCTGATGTCATTAAAAAAAGTGTTTGTAGTGCTACTTTGCTG
TGTCCTGATTCAATTAATGTTTTATTAACCGCTGTGTTTTTAAAAATTTGTTTGCCT

Expression



Full and truncated open reading frames discovered in TCONS_00246554

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.