Detailed information on TCONS_00258069

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
TCONS_00148704 WD repeat containing planar cell polarity effector novel protein coding TCONS_00258069 1072 458 UTR3 Trans
TCONS_00148705 WD repeat containing planar cell polarity effector novel protein coding TCONS_00258069 1072 458 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00258069 608 301 UTR3 Trans
TCONS_00193640 hematopoietic prostaglandin D synthase novel protein coding TCONS_00258069 1095 457 UTR3 Trans

Sequence

>TCONS_00193640 (4419 nt)
CCAGAGTGTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGAT
AGTTTACTGAGGATGATGGTTTCCAATTTCATCCATGTCCCTACAGAGGACATGAACTCACCCTTTTCTATGGCTGTATAGTATTCCATGGTGTATATGT
GCCACATTTTCTTATTCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCGCAATAAACATACGTGTGCATGT
GTCTTTATAGCAGCATGATTTATAGTCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGC
CACACTGACTTCCACAAGGGTTGAACTAGTTTACAGTCCCACCAATGGTGTAAAAGTGTTCTACACTTATATAAAATATTGTGTGCATGTCTTGTAACCA
CTTTCAGTTTATGAAATACTCCCATATTCCACTAGGAATGTAACCTCAGTCTATCCCTGAGCAGGATTATCTATGTTTAAAGTGCCAGGTTGATAGTTGT
GGAACCAAGGCTTGGAGCCCTCAAGGATCATGCTCAGGCTGTGGAACTCCCTGGACCACGTGCCATCTCCAGCAGATCTGGGTGCAAGCCCAGGTTCACT
AATCACCAGGTCACATGTGAGACCATGTCCACCTCACCACCCTCAGCCTCCAAAGAAAAGTGAGCAGAACTCTTCTCATTTAAACCTATATCATTTTGTC
ATCCTTTTCAGTGTGATTCTCTGGAGCTCCTAGCTAGAGGGGCCTCAAGGACCAAGACAAGGATATTCTACTCACAATGTGACTTCCCCAAGTCATAAAG
TAGCTGCTGTGTTTTGTTACTAAACGTGCTCCCCTTGCTGTCCTCCCTCTCCCTTTTAGAGCCATGGGACCACACCACCACCACCACAACCAATAGGCCA
GGAACCACCAGAGCTCCGGCAAAACCTCCAGGTAGTGGATTGGACTTGGCTGATGCTTTGGATGATCAAGATGATGGCCGCAGGAAACCGGGTATAGGAG
GAAGAGAGAGATGGAACCATGTAACCACCACGACCAAGAGGCCAGTAACCACCAGAGCTCCAGCAAATACTTTAGGAAATGATTTTGACTTGGCTGATGC
CCTGGATGATCGAAATGATCGAGATGATGGCCGCAGGAAACCAATTGCTGGAGGAGGAGGTTTTTCAGACAAGGATCTTGAAGACATAGTAGGGGGTGGA
GAATACAAACCTGACAAGGGTAAAGGTGATGGCCGGTACGGCAGCAATGACGACCCTGGATCTGGCATGGTGGCAGAGCCTGGCACCATTGCCGGGGTGG
CCAGCGCCCTGGCCATGGCCCTCATCGGTGCCGTCTCCAGCTACATCTCCTACCAGCAGAAGAAGTTCTGCTTCAGCATTCAGCAGGGTCTCAACGCAGA
CTACGTGAAGGGAGAGAACCTGGAAGCCGTGGTATGTGAGGAACCCCAAGTGAAATACTCCACGTTGCACACGCAGTCTGCAGAGCCGCCGCCGCCGCCC
GAACCAGCCCGGATCTGAGGGCCCTGTCCAGCTGCAGGCATGCACAATGGTGCCACCGCTTGTCACCCGGCTCCCCCCACCCCTTCATTTGGACCCGCAG
CTGCTGTGCTGCTCTGTGCCATCGGCTCCTTGTTGGTCTGAGTTTCCCGGATGAGCTCTGGGTGTTTGTGAGTTTGGTTTCTCTGCCCTGCCCCAAGCGT
GCTGAGACTTGGTGCCGAAATTCAAGAGCCAGCTCTGATAGAAAGCCAGCACCAGCCTCGGGAGCTGCTGAGCCACCAACTCCCAAAGCCAGCCTGCCTC
CAGCTTTACTGAGCACAGGATGCGGGGGCCAAGATGATGCTGAGGCCTGATGACATTTATGCTTAGGGGACAAGAGTTTGAACTCAAGGGACTGTGACCC
CTGCACACTGGAGTGGCTCATTGTGGCAGGTTTCTGCCAATAGACAGCCCCTGACAGTGGCCTCAAGGAGCTGCAGGTGGGGGGCTCAGCCTGCACCCAC
TTGGAGCCCCTGCAAGGAGCGAACCGGTCAGCACCAAGTAACACCACACACACGCAGCACCCAGGATGATGGTTTCACTTCAGTCTTCCCCATCCCAGGT
TTTATGTTGCTGGGCTTCCGGAGAGCCGGTCCAAGCGGAGGCTTTCAGTGATTTAAGTACAAACATGCATCTCGTGATAGTCCTGCCTTGAGAGCTTAGG
AATCTTCCGGATAAGTATGAAGCAATTCGTAGGCCTGTTTCCCATCTGATTCCATAGGGGGCTGGGTGTGGCCTTCGGGTTGACATGAGAAAGGTCTTTA
GCAATCATTTCTGCACCGGAGATGAGTTTTATCCTGTGTTGGGGAGAGGTGCTCACCCTCCACCCTGTGTCCCTGTTTTGGTAGCAAGAGTGACCGATGT
CAAGAACGAGCATCAAAGCCAGAATCCTGCTTGTTTGCTTAAAAATGTAATTGGGGGCGGCGGGGGAGGAGAGGGGAAAGAGACATTCGCTTGGTTTAGT
GAAACGCAGGTGACTTTGTAGCTCTGTGGTCAGCCTACTTGTCTGCTCTGAGGGAGAGTGCGTGGGGAGCCATGCTCACCGTGGCAAACACAGGAACCCC
ATGACTCGCCCCTCACCTGGCGTGGAGCTGCCTGGTTTGGGCTGGAGCAGAGCTGGTTTCCTGGAATGTTCCTTTGGCCCACATATGGTTCTGTCCCGGT
GAGCTCTGTTGTCAGAGGCTCACGGGACAGAACCACATGCTAGGGTCTAGGGCCCCTGTCTACTGATAGTCAGTTTGCTGTGTCAGAAAGCACTTCTGAA
AGCAGATATGAGTCACCAGACAGGCAGGATCTTACAAAACTCACGGGCCTCTTTGGTCTGCATGATGGCCCCATGCGTTTCATAGGCTGTCCACTGAGCG
GGATTGTCTGCTGAGTGGGATGAGCCAACTCCAGTTTCTTAAGGAAACCACTGGAATCTGCAGCCCCCACATGCATCTGTCTAACGCATGCCTCGTGTTC
GTTTTGCAAACATGCCTGTGGTGGAGGGTGGTCAGTTGTAGCCCTGTGCGTCTCAAGGCTGCCTTGTGAGGCCATTCCCAGTGCGTGCCCTTGAGCTCCT
TACCACCCCTTTTCCTGCTCGGCCCTTTAATCCCTGACAGACCTGGACTGTGTGGCTGAAGGGGGACCTGCAGCACTGCAGAAATGCCTCTGCGTGGTGC
CATGAAGGAAAGAAACCTTGGCCTGGTCTCGAGAAGCTTCCCATGCTTCAGGAAGTTAGTAAGGGTGGGGTGGCTTGCAGGATTGGCCTGTTTCCAGGGC
CTCCCACACTCATTGGCCAGATTGTGAACTTTGTCAGGCTTGTCCCTCCCTGATACCAAGTATGTCGAGAACCGATGGCCCCACCCTCTGGCTGGTGCTG
GGCCGGAGGTGGCTATGGAGGATTTTGGCATGCGTGGCCTGTCGCCACCTGGACAGCGTGACCTCAGGGGTTGTCCACTTTACCTTTATGGTGAGGCCTG
TCGGATGGCTAAGTCCTTGAAACCCTAGAGCTGTGACGTAGAATATGTGCTGTCTGTGAGACCGTGTTCCCAGGAGCACTGACTGCAGTTGAGAGAGACC
CATTTTGCTCTCCCTTACCGCCCCCCGCCCCGGGTGCTTTCTGCACAAAGCCTAGAGCCTGGCACTCAAGCCCACCGGTGGCAGCTCCTAGTGACTGGAC
ATGCCTGGAAGACCCCTCAGCCTTCTGTTTGCAGAACGTTCATTTCAGGAGCTTCTCCTTCCCACAGACATCTTACACTTGCTCGACACTGCCACCTGCA
GAAGCCTGGCGGGCTCTGGTCACCATGTGTCTATCTGAAGGTTGCACTGGCCAGCATGGGCCTGTCCCAAGCGAGAGGGGAGACACAGTGGACTGAAAGG
ACTGGTTGAAAGTGGCCAATCTCTATCAGCTTAATTTGGCAGAGAAAATTTGTAACAACTCTGAGCACATGCTGGGTGAAGTCACAGCTCAAGGAAAGAT
AAAGCTGGGCGGAAGGAGGTGTGCGTGGCTTCTGGGGTGGGACCCAGAGGGGAGGCTCTGGGACAGGGGCTGGGGTTCAGTGCCAGGGCCCTGAGGAAGA
AATGGGGACTGATCTCAAAATTCCAGAATTCCCTGTACATCTGTTCACGTGCTTGTGTCCAGGTGTGACTTGTAAACTGTCTAGTGTTTGCATTAAATAA
AATGGCACCGAGCAGATTCTTGTCTTCTGATGGTGTTAAGGCACGCCCTTGGTCAAGTGTTGCCACTTTTCCCTAAAGTAAGTAATTTATGATGCAGAGC
TGCCCTCCTCCCCCTCCCCC

Expression



Full and truncated open reading frames discovered in TCONS_00193640

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.