Detailed information on TCONS_00258813

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000332592 DCN1, defective in cullin neddylation 1, domain containing 2 protein coding TCONS_00258813 590 295 UTR3 Trans
ENST00000375403 DCN1, defective in cullin neddylation 1, domain containing 2 nonsense mediated decay TCONS_00258813 590 295 UTR3 Trans
ENST00000389534 zinc finger protein 841 protein coding TCONS_00258813 506 274 UTR3 Trans
ENST00000426391 zinc finger protein 841 protein coding TCONS_00258813 506 274 UTR3 Trans
ENST00000594295 zinc finger protein 841 protein coding TCONS_00258813 506 274 UTR3 Trans
TCONS_00116668 desmoglein 3 novel protein coding TCONS_00258813 524 285 UTR3 Trans
TCONS_00135644 zinc finger protein 841 novel protein coding TCONS_00258813 506 274 UTR3 Trans

Sequence

>TCONS_00135644 (3661 nt)
TTGCAGTGAGCCGAAATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGTCTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAATTTCTTAGTGTTTGCTCTCAAAGGTATTGTGCGTTGTCTTGGAGGCTGAGATGTGGGAACAGACAGATCCTTTGTTCTGA
GGCTCACTCATCTCCCGAGCCCCGAGCCGTCTCCCAGCCTCAGACGGCTCTGCGGGCTGCATCTGTGCAGCCTGGCAGCGGCGGCGCTGCGCTGTGACAT
TTTCACAGCCCTTCTTGCAGAGGCATGTGTGCTAGGGATGCCGAAATGCCGAGAGCGCCGGCAGGACTAGCTTCCGGGCCGCGCTTTGTGTGCTGGGCTG
CAGTGTGGCGCGGGCGAGGAAGCTGGTAGGGCGGTTGTCGCAAGCTCCAGCTGCAGCCTCCGCCTACGTGAGAAGACTAGAAAGCGGGCGCAGGACCAGG
CCTGCGTTGTTTGCAGAGAGGCCGTGGCTACAAAATGGAAGTGCTTTTGCGACCTGGGCTCCATTTTAGGAATTCTTGCCCGATTTTAACCACTTGAACG
CGGAAGTGGCTTTCCTATTCTCTTCCAAGCCAGCCTTTAATTTTAAACGCTGTAATTAACAGTTCACAGGGGTCAAATTCCTTTATTCCGGAACATTCCA
CTTTGAGAGGGATCTGTCCTCTTTGGTCCCCTGCGTTTTCAAATATTTGAGGAAAGGTGTCGCCTCTTTTTCTGTGGAAAGAGGAAGCTCATGAGCGCGA
AACAGCAGGGGACGGAGGGCGAGAAGGGCTTTCTCAGGTTGCGGGTCGGAGGGCAGAAGCACAGTTCCCAGTACAGAGACCCGGACAGGTGGCTGTTTCT
CACGCTCACTTTGGATTGCTCCCTACGGCTTCCTCCGCAGCCATGTCTGACAAACCTGGTATGGCTGAGATCGAGAAATTCGATAAGTCGAAACTGAAGA
AGACAGAAACGCAAGAGAAGAATCCATTGTCTTCCAAAGAAACTATCGAACAGGAGAGGCAAGCAGGCGAATCTTAAACAGGCATGTGCCACCAATATCT
ACTGTACATTCTACAAGCATTGCTTTCTTATTTTACTTCTTTTACTTGTTTAACTTGGTTAGATGCAAACACGTTGGATGAGTTTGAAAGGACTATGCTG
CCCTTTTGACATCAAAGACCTGCTGACAATGGAGGCCACGCCTGCTTCTCCCATCGCCTGTCTGGCTGGCAGGGAAGGAAAATAGCTTGAATGTTGGTGA
AAGACTTAGCGGAGTGGGAGGGCAGTGAAATCTAGAGTAAAACCAAGTTGGGCCAAGTGTCCTGCAGAATCTAAAATGAAGTTTAATCAGCGTGCCATTT
TTGTTGTTGTTTGAAAGATTTTAATTTTTGGAATGCACAGTTTTTATTTAAAAAAGACATTTTTAAACCACTGCTTGTGAGATTGCTTGTTGATTGGAAA
GAGTGTTTTATTCACCATTTAAACGTTTGCAAAGTGGCGTGCCCCTTGGCCTCACAGGCAAAGAATAACTTAAAAGCTGACGATTTGAATAAATTATGTT
ACAGTATGAAATATGTTTTACCTGGATATGTAAAATACCTTCTTTATTCTAGCTAATTGGGAGATGATTTTTTTTGGCTAATTGAGATTACCTTTAGATT
ATGTTTTCAAAACTGGCTTATACTGTAATCTACAACTAATAAGCACTAATTTAGAGTTCAGCTATATTGTTGCATGTAGTGAGAAGGGACTTAATTACAA
ACTTAAGACGTAAGTGTGCAATAAAGTAAGCTAAGAAGAAAATATGCTTCTAAGACCTGTATTTACTTGGTTTATATTTTCCTTAGCTTTTTATGTAACG
TTTTATCTGTGGTCACATTGACATGCTTGGGCTATCCCTACTCCTGGCTTCTGAGACCGGTGGGCAGGGTTCATGCATGCACTGTGCGCGTGCACTCTTC
ATTGTGGGCATGCACTGTGTACTCTTCCTTCTATTTCCCAAAGTGCCTCACATAGTAATGGACATACATGATGGCTTTAATATACACTTTGCCCCCGTAG
TTGTTGGAGAGTTATTAAACATGCTTCTTTTGAGGTCCCTTTGAACACATGCATATCATGTGAAATAGTACAATATTAAATATATTTTTAAAATGTATTT
ACACAGGAATTTGCCACTGTTTTTGATTGTGCTGATTTGAATCAATACGTATAGTCAATTATATACTATTATATATTATTAGTCCAGAGCATTAGATCAT
TAGTTCATTCAGCCAGTATTTATTGAGTGCCTCCAACATGACAGGTGTCTTTTTTTTGAGACGGAGTTTTGCTCTGTCGCTTGGGCTAGAGTCTAGTGAT
GCGATCTCGGCTCACTGCAACCTCCGCCTCCCGGTTCAAGCAATTCTCCTGCTTCAGCCTCCTGAGTAACTGGGATTACAGGCTGCACCACCATGCTGGG
CTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCACCTTGGCTAGACTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCACCCAAA
GTGCTGGGATTACAGGCCTGAGCCACTTTGCCTGGCCCATGCCAGCTATTTTTATATGCCATAAGAAATACAGCCTTAACTAAAAAGATAGTATCTTACA
TTGTGTTTCCTTCATCAGCTAGAAGATGTCCTTTTCCTCTAAATCTGATTATGAACGTTTTTATATTTATTTTAGTTATTTATTTTTGTGAGATGGAGTC
TTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCATTCCAAGCTCCGTCTACCTGTTCAAACTATTCTCTTGCTTCAGCCTCCTGCATA
GCTGGGACTACAGGCGCTCAACCACGAAGCACAGCTAATTTTTGTATTTTTAGTAGAGATGGTATTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCTTG
ACCTCAGGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGTCACTGCACCCAGCTGAATGTTTTTATAAAGGTATCTAAAATTA
TTATATCCAGATTTCTCCAAAGCTCAATGGTCAATGAATTCTGATGGAAACCAACTGATGACTTGCATTGCAGTAAAATATTTTATGAGCATACACAAAT
TGGACATTATAACTGTTGTCTGATATCTTCCAAGAATTCTGAGGAATGCTCCAGATCTAGAAGTGAGTGGAATGGATGGATGCCATTTTAAAATCTTTTA
CTAAGACTTTGTTATGTAGATGTTGTATTTTTTGAAGAACACTTTCCTGGTAAATTCTTGCCATTCTTGTGTTAGTCTTGTGGGATTGTTGTGGGCAAAA
ACAGTAGCTCACATGTTAAAGTCCTTCAAAGAACTTAGAAAAATAATAAAACCACGTGGATAATTTGGTCACTTTTTTGTAGGATTTTACAATTTTGAAC
CTTGGCTAGAGGAGCAAGTTATGGTTGTGATCCACTGAAGGCATTAGAGCTATTCCTGTCACATTATTATCAAACAGGAAATTATGTCTTTCTTCATTAC
CATATTGAGCTTTTAAGTTGCTGATATCCTTTAGCTACATGAACACCTCATGATAATGTCCC

Expression



Full and truncated open reading frames discovered in TCONS_00135644

In silico ORF/peptide predictions
Nothing found.


RiboTaper predictions from Ribo-Seq data (HEK293 cell line)
Nothing found.

BLAST search results

No hits found.