Common name: Lamprey
Latin name: Petromyzon marinus
Genome assembly: Pmarinus_7.0
All retrocopies: 26
Parental genes: 25

Summary: Number of retrocopies :
Conserved ORF: 14 ORF 12 ORF
Expressed retrocopies (EST): 2 EST 24 EST

# RetrogeneDB ID Identity Coverage ORF conservation Expression evidence
1. retro_pmar_1 67.21 % 96.83 % ORF EST
2. retro_pmar_2 63.35 % 67.29 % ORF EST
3. retro_pmar_3 51.09 % 81.49 % ORF EST
4. retro_pmar_4 99.47 % 100.00 % ORF EST
5. retro_pmar_5 67.04 % 98.90 % ORF EST
6. retro_pmar_6 100.00 % 98.76 % ORF EST
7. retro_pmar_7 80.27 % 99.66 % ORF EST
8. retro_pmar_8 66.02 % 92.01 % ORF EST
9. retro_pmar_9 96.86 % 100.00 % ORF EST
10. retro_pmar_10 100.00 % 100.00 % ORF EST
11. retro_pmar_11 68.66 % 70.65 % ORF EST
12. retro_pmar_12 85.04 % 83.89 % ORF EST
13. retro_pmar_13 52.11 % 72.45 % ORF EST
14. retro_pmar_14 50.34 % 94.27 % ORF EST
15. retro_pmar_15 68.54 % 72.88 % ORF EST
16. retro_pmar_17 83.66 % 73.09 % ORF EST
17. retro_pmar_19 54.33 % 54.86 % ORF EST
18. retro_pmar_20 52.66 % 68.16 % ORF EST
19. retro_pmar_21 65.76 % 98.21 % ORF EST
20. retro_pmar_22 61.94 % 67.34 % ORF EST
21. retro_pmar_23 62.14 % 53.93 % ORF EST
22. retro_pmar_24 56.19 % 74.20 % ORF EST
23. retro_pmar_25 64.97 % 75.36 % ORF EST
24. retro_pmar_26 50.50 % 70.35 % ORF EST
25. retro_pmar_27 51.20 % 67.76 % ORF EST
26. retro_pmar_28 60.58 % 100.00 % ORF EST
# Ensembl ID Symbol Description
1. ENSPMAG00000009544 ctdsp2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-184]
2. ENSPMAG00000000527 iars isoleucyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-6325]
3. ENSPMAG00000003453
4. ENSPMAG00000005873
5. ENSPMAG00000009864 si:dkey-26i13.8 si:dkey-26i13.8 [Source:ZFIN;Acc:ZDB-GENE-090312-134]
6. ENSPMAG00000004161
7. ENSPMAG00000005110 Variable lymphocyte receptor B cassette [Source:UniProtKB/TrEMBL;Acc:A5HHB2]
8. ENSPMAG00000009335 rab11bb RAB11B, member RAS oncogene family, b [Source:ZFIN;Acc:ZDB-GENE-040718-293]
9. ENSPMAG00000009095 RDH13 retinol dehydrogenase 13 (all-trans/9-cis) [Source:HGNC Symbol;Acc:19978]
10. ENSPMAG00000003323
11. ENSPMAG00000005561 prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Source:ZFIN;Acc:ZDB-GENE-040801-225]
12. ENSPMAG00000008617 rpl28 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
13. ENSPMAG00000002040 rpl5b ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
14. ENSPMAG00000000531
15. ENSPMAG00000002236 trnt1 tRNA nucleotidyl transferase, CCA-adding, 1 [Source:ZFIN;Acc:ZDB-GENE-040625-176]
16. ENSPMAG00000001562 C1GALT1 (1 of 4) core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 [Source:HGNC Symbol;Acc:24337]
17. ENSPMAG00000007189 rbb4l retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
18. ENSPMAG00000001339 rplp0 (1 of 2) ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
19. ENSPMAG00000000001 RPL37A ribosomal protein L37a [Source:HGNC Symbol;Acc:10348]
20. ENSPMAG00000009321 gapdhs (1 of 2) glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:ZFIN;Acc:ZDB-GENE-020913-1]
21. ENSPMAG00000002377 NXPH3 neurexophilin 3 [Source:HGNC Symbol;Acc:8077]
22. ENSPMAG00000005470 has1 hyaluronan synthase 1 [Source:ZFIN;Acc:ZDB-GENE-040218-2]
23. ENSPMAG00000009576 rplp2 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
24. ENSPMAG00000006959
25. ENSPMAG00000006113
Retrogenes FASTA BED
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Parental genes FASTA BED
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