Parental gene: | C5H22orf28, ENSBTAG00000011070 |
| Aliases: | RTCB, C22orf28, C5H22orf28, HSPC117 |
| Description: | tRNA-splicing ligase RtcB homolog [Source:UniProtKB/Swiss-Prot;Acc:Q5E9T9] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 5:71366685..71388046(-) |
>ENSBTAG00000011070
ATGAGTCGCAGTTATAATGATGAGCTGCAGTTCTTGGAAAAGATCAGTAAGAACTGCTGGAGAATCAAGAAGGGCTTCGT
GCCCAACATGCAGGTTGAAGGAGTTTTCTATGTGAATGATTCTCTGGAAAAATTAATGTTTGAAGAATTAAGGAATGCCT
GTCGAGGTGGTGGTGTTGGTGGCTTCCTGCCAGCCATGAAACAAATTGGCAATGTGGCCGCCCTGCCTGGGATTGTTCAT
CGATCCATCGGTCTTCCTGATGTCCATTCAGGTTATGGGTTTGCTATTGGAAATATGGCAGCCTTTGATATGAACGACCC
TGAAGCAGTGGTATCCCCAGGTGGTGTTGGGTTTGACATTAACTGTGGTGTCCGCTTGCTGAGAACCAATTTAGATGAAA
GTGATGTTCAGCCTGTGAAAGAGCAACTTGCCCAAGCTATGTTTGACCACATTCCTGTGGGAGTGGGGTCAAAAGGTGTC
ATCCCAATGAATGCCAAAGACTTGGAGGAGGCCTTGGAGATGGGTGTGGACTGGTCCCTGAGAGAAGGCTATGCCTGGGC
AGAGGACAAGGAGCACTGTGAGGAGTATGGAAGGATGCTGCAAGCTGATCCCAATAAAGTCTCAGCCAGGGCTAAAAAAA
GAGGCCTTCCCCAGTTGGGGACTCTGGGAGCAGGCAACCACTATGCAGAAATCCAGGTTGTGGATGAGATTTTCAACGAG
TATGCTGCTAAGAAAATGGGCATTGACCATAAGGGACAGGTGTGTGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCCA
CCAAGTTGCCACAGATGCACTTGTAGCTATGGAAAAAGCCATGAAGAGAGACAAGATTATAGTCAATGACCGTCAGTTGG
CTTGTGCTCGAATTGCTTCCCCAGAGGGTCAGGACTACCTGAAGGGAATGGCAGCGGCTGGGAACTATGCCTGGGTCAAC
CGCTCTTCCATGACCTTCTTAACCCGTCAGGCTTTTGCCAAGGTCTTCAACACAACCCCTGATGACTTGGACCTGCATGT
GATCTATGATGTTTCTCACAATATTGCCAAAGTAGAACAGCATGTGGTGGACGGGAAGGAGCGGACTCTGTTAGTACACA
GGAAGGGGTCCACCCGAGCCTTCCCTCCTCACCATCCCCTCATTGCGGTTGATTACCAACTTACCGGACAACCAGTGCTC
ATTGGTGGCACCATGGGAACCTGTAGCTATGTTCTTACTGGTACTGAGCAGGGCATGACTGAAACCTTTGGAACAACTTG
TCATGGAGCGGGCCGTGCACTGTCCCGAGCAAAGTCAAGACGTAATTTAGATTTCCAGGATGTCCTCGACAAATTGGCAG
ACATGGGAATTGCAATCCGTGTCGCCTCACCCAAGCTGGTAATGGAAGAGGCCCCTGAGTCCTATAAGAACGTGACGGAT
GTGGTGAACACCTGCCATGATGCCGGAATCAGCAAGAAGGCCATTAAACTGAGGCCAATTGCTGTTATCAAAGGATAG
| Library | Parental gene expression (RPM) |
|---|---|
| ERP005899_liver | 14 .64 RPM |
| ERP005899_muscle | 48 .99 RPM |
| SRP017611_brain | 35 .81 RPM |
| SRP017611_kidney | 47 .77 RPM |
| SRP017611_liver | 30 .81 RPM |
| SRP030211_testis | 43 .97 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000001785 | ortholog_one2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007803 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008270 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_1682 | 80.95 | 61.98 | Please wait, loading  |
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Download FASTA sequences of all ENSBTAG00000011070 retrocopies