RetrogeneDB ID: retro_mluc_1461

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429842:4534590..4536106(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028489
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: C22ORF28
• Ensembl ID: ENSMLUG00000007803
• Aliases: None
• Description: None

Sequence

>retro_mluc_1461
ATGAGTTGCAACTACAACGATGAGCTGCAGTTCTTGGAAAAGATCAATAAAAACTGTTGGAGAATCAAGAAGGGCTTCGT
GCCCAACATGCAGGTTGAAGGAATTTTCTATGTAAATGATGCTCTGGAAAAATTAATGTTTGAGGAATTAAGGAATGCGT
GTCGAGGTGGCGGTGTTGGTGGCTTCCTGCCTGCCATGAAACAAATTGGCAATGTGGCAGCCCTGCCTGGGATTGTTCAT
CGATCTATTGGGCTTCCTGATGTCCATTCAGGTTATGGGTTTGCTATTGGGAATATGGCAGCCTTTGATATGAATGACCC
TGAAGCAGTGGTGTCCCCAGGTGGTGTCGGATTTGACATCAATTGCGGGGTTCGCTTGCTAAGAACCAATATAGATGAAA
GCGATGTCCAGCCTGTGAAGGAGCAACTTGCCCAAGCTATGTTTGACCACATCCCTGTTGGGGTGGGATCCAAAGGTGTC
CATCCCAATGAATGCCAAAGACTTGGAAGAGGCCTTGGAGATGGGTGTGGACTGGTCGCTAAGAGAAGGCTACGCCTGGG
CTGAAGACAAGGAGCACTGTGAGGAGTATGAAAGAATGCTGCAAGCTGACCCCAATAAGGTCTCTGCAAGGGCGAAAAAA
AGAGGCCTTCCTCAGTTGGGGACCCTGGGAGCAGGTAACCACTATGCAGAAATCCAAGTTGTAGATGAGATTTTCAATGA
ATATGCTGCTAAGAAGATGGGCATCGACCATAAAGGACAGGTGTGCGTGATGATCCACAGTGGAAGCAGAGGCTTGGGCC
ACCAAGTAGCCACAGATGCCCTGGTTGCTATGGAAAAAGCCATGAAGAGAGACAAGATTATAGTCAATGACCGTCAGTTG
GCTTGTGCTCGAATCGCTTCTCCAGAGGGTCAGGACTACCTGAAGGGAATGGCAGCAGCTGGGAACTATGCCTGGGTCAA
CCGCTCTTCCATGACCTTCTTAACCCGTCAGGCTTTTGCCAAGGTATTCAACACAACCCCTGATGACTTGGACCTACACG
TCATCTATGATGTTTCTCACAATATCGCCAAAGTGGAACAGCACGTGGTGGATGGAAAGGAGCGGACCCTGTTAGTACAC
AGGAAGGGATCCACCCGAGCTTTCCCTCCTCACCATCCCCTCATTGCTGTTGATTACCAACTCACTGGACAACCAGTGCT
CATTGGTGGCACCATGGGAACCTGTAGTTACGTTCTTACTGGCACTGAGCAGGGCATGACTGAGACCTTTGGGACAACCT
GCCATGGAGCGGGCCGTGCATTGTCCCGAGCAAAATCTCGACGTAACTTAGATTTCCGGGACGTCTTAGACAAATTGGCA
GATATGGGAATTGCAATTCGTGTTGCCTCACCCAAACTGGTTATGGAAGAGGCTCCTGAGTCCTATAAGAACGTGATGGA
TGTTGTGAACACCTGCCATGATGCTGGAATCAGCAAGAAGGCCATTAAACTGAGACCGATTGCTGTTATCAAAGGG

Alignment

ORF - retro_mluc_1461 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.25 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVMVEGIFYVNDALEKLMFEELR-ECVSRWR-VGGFLPAM
          MS.NYNDELQFLEKINKNCWRIKKGFVPNMQV..EGIFYVNDALEKLMFEELR.ECVSRWR.VGGFLPAM
Retrocopy MSCNYNDELQFLEKINKNCWRIKKGFVPNMQV--EGIFYVNDALEKLMFEELR<ECVSRWR>VGGFLPAM

Parental  KQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDV
          KQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTN.DESDV
Retrocopy KQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNIDESDV

Parental  QPVKEQLAQAMFDHIPVGVGSKGV-IPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPN
          QPVKEQLAQAMFDHIPVGVGSKGV.IPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEY.RMLQADPN
Retrocopy QPVKEQLAQAMFDHIPVGVGSKGV>IPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYERMLQADPN

Parental  KVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALV
          KVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALV
Retrocopy KVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALV

Parental  AMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDL
          AMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDL
Retrocopy AMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDL

Parental  HVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGT
          HVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGT
Retrocopy HVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGT

Parental  EQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEVWSAYKNVTDVVNTC
          EQGMTETFGTTCHGAGRALSRAKSRRNLDF.DVLDKLADMGIAIRVASPKLVMEE....YKNV.DVVNTC
Retrocopy EQGMTETFGTTCHGAGRALSRAKSRRNLDFRDVLDKLADMGIAIRVASPKLVMEEAPESYKNVMDVVNTC

Parental  HDAGISKKAIKLRPIAVIKG
          HDAGISKKAIKLRPIAVIKG
Retrocopy HDAGISKKAIKLRPIAVIKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1461 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011070	1 retrocopy	retro_btau_1682,
Canis familiaris	ENSCAFG00000001785	2 retrocopies	retro_cfam_13, retro_cfam_977,
Myotis lucifugus	ENSMLUG00000007803	1 retrocopy	retro_mluc_1461 ,
Oryctolagus cuniculus	ENSOCUG00000008270	1 retrocopy	retro_ocun_1520,