Parental gene:

PAIP1, ENSBTAG00000020376

Aliases:None
Description:polyadenylate-binding protein-interacting protein 1 [Source:RefSeq peptide;Acc:NP_001098441]
Organism:Cow (Bos taurus)
Coordinates:20:31284381..31311777(+)


>ENSBTAG00000020376
ATGTCGGACGGTTTCGACCGGGCCCCAGAACAAACGAGGCCCCTGAGAGCTCCATCTAGTTCGCCGGATAACATCCCACA
GCAGAATTCGGAGTCAGCAATGGCTAAACCCCAGGTGGTTGTAGCTCCTGTATTAATGTCTAAGCTGTCTGTAAACGCCC
CTGAATTCTACCCATCAAGTTATTCTTCTAATTATACAGAATCCTATGAGGACGGCTGTGAGGATTATCCTACTTTATCA
GAATATGTTCAGGATTTTTTGAATCATCTTACAGAACAGCCTGGCAGTTTTGAAACTGAAATTGGACAGTTTGCAGAGAC
CCTGAATGGCTGGGTTACAACAGATGATGCTTTGCAAGAACTTATGGAACTCATCTATCAACAGGCCACATCTATCCCCA
ATTTCTCTTACATGGGAGCACGCCTCTGTAACTACCTGTCCCATCATCTGACAATTAGCCCACAGAGTGGCAACTTTCGC
CAATTGCTACTTCAAAGATGTCGGACTGAATATGAAGTTAAAGATCAAGCTGCAAAAGGGGATGAAGTGACTCGAAAACG
ATTCCATGCATTTGTACTCTTTCTGGGAGAACTCTATCTTAACCTGGAGATTAAAGGGACAAATGGACAGGTTACAAGGG
CAGACATTCTTCAGACCGGTCTTCGGGAGTTGCTGAATGCCCTCTTCTCTAATCCTATGGATGACAACTTAATCTGTGCA
GTAAAATTACTGAAGTTGACAGGGTCAGTTTTAGAAGATGCCTGGAAGGAAAAAGGAAAGACTGACATGGAAGAAATTAT
TCAGAGAATTGAAAATGTTGTCCTAGATGCAAATTGCAGCAGAGATGTAAAACAGATGCTTTTGAAGCTTGTAGAACTCC
GGTCAAGTAACTGGGGTAGAGTCCATGCAGCTTCAACATACAGGGAAGCAACACCTGAAAATGATCCTAATTATTTTATG
AATGAGCCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCAGCTGATCCAGATTACCAAGAGAAATATCAAGAGTT
ACTTGAAAGAGAAGACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTATCAGGGGGTGGTGATCCGTACTTGGATG
ATATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGAAAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAG
TAA

Library Parental gene expression (RPM)
ERP005899_liver 29 .92 RPM
ERP005899_muscle 39 .22 RPM
SRP017611_brain 20 .51 RPM
SRP017611_kidney 31 .53 RPM
SRP017611_liver 15 .71 RPM
SRP030211_testis 96 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004961 ortholog_one2one 1 retrogene
retro_chof_762,
Callithrix jacchus ENSCJAG00000001340 ortholog_one2one 2 retrogenes
retro_cjac_3224, retro_cjac_3337,
Cavia porcellus ENSCPOG00000002525 possible_ortholog 2 retrogenes
retro_cpor_133, retro_cpor_197,
Erinaceus europaeus ENSEEUG00000009651 possible_ortholog 1 retrogene
retro_eeur_304,
Homo sapiens ENSG00000172239 ortholog_one2one 1 retrogene
retro_hsap_1726,
Otolemur garnettii ENSOGAG00000001887 ortholog_one2one 2 retrogenes
retro_ogar_1096, retro_ogar_1241,
Ochotona princeps ENSOPRG00000000386 possible_ortholog 2 retrogenes
retro_opri_185, retro_opri_469,
Ictidomys tridecemlineatus ENSSTOG00000011203 possible_ortholog 1 retrogene
retro_itri_234,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_359 98.47 97.75
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Download FASTA sequences of all ENSBTAG00000020376 retrocopies