Parental gene:

PTGR1, ENSCAFG00000003000

Aliases:None
Description:prostaglandin reductase 1 [Source:HGNC Symbol;Acc:18429]
Organism:Dog (Canis familiaris)
Coordinates:11:66189886..66209218(-)


>ENSCAFG00000003000
ATGGTTCATGCTAAGAGCTGGACTCTGAAGAAGCACTTTGAAGGCAGCCCTACTCATAGTAACTTTGAGTTAAAGACGGT
TGAACTCCCGTCCTTAAAAAATGGAGAGGTCCTGCTGGAAGCTTTGTTCCTTACCGTGGATCCTTACATGAGAGTGGCAG
CCAAAAGATTGAAGGAGGGTGACATGATGATGGGGCAGCAAGTGGCCAGAGTTGTGGAAAGTAAAAACTCAGCCTTCCCA
GCAGGAACTGTGGTAGTGGCTTCTTCAGGCTGGACATCACACTCTATTTCTGATGGGAAAGATCTGGAAAAGCTGCCTGC
AGAGTGGCCAGACACCGTACCAGTGTCTTTGGCTTTGGGAACAATTGGCATGACAGGACTAACAGCCTACTTTGGCCTCC
TTGACATCTGTGGTGTGAAGGGTGGAGAAACAGTGATGGTTAATGCAGCAGCAGGGGCAGTGGGCTCTGTGGTGGGGCAG
ATTGCTAAGCTCAAGGGCTGCAAAGTTGTTGGAGCAGCAGGGTCTGACGAAAAGGTTGCCTACCTTAAAAAGCTTGGATA
TGATGTTGCCTTTAACTACAAAACCATAAAGTCTTTGGAAGAAACTTTGAAAAAAGCCTCTCCTGATGGTTATGATTGTT
ACTTTGATAATGTAGGTGGAGAGTTTTCAAACATTGTTATTCCCCAGATGAAGAAGTTTGGAAGAATTGCTATTTGTGGG
GCCATCTCGACATATAATAGTACTCGCCCACTTCCCCCAGGCCCACCCCCGGAGAATATTATCTATCAGCAGCTCCGCAT
GGAAGGGTTCATCGTTAATCGCTGGCAAGGAGATGTCCGCCAGAAGGCTCTGAAAGACTTGCTGACATGGGTCATAGAGG
GTAAAATCCAGTACCACGAATACATCATTGAAGGATTTGAAAACATGCCGGCTGCATTTATGGGAATGCTGAAAGGAGAT
AATTTGGGAAAAACAATAGTGAAAGCATGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 19 .24 RPM
SRP017611_brain 13 .42 RPM
SRP017611_kidney 21 .40 RPM
SRP017611_liver 29 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000017571 ortholog_one2one 1 retrogene
retro_cjac_1653,
Echinops telfairi ENSETEG00000006136 ortholog_one2one 1 retrogene
retro_etel_358,
Felis catus ENSFCAG00000004339 ortholog_one2one 1 retrogene
retro_fcat_1898,
Homo sapiens ENSG00000106853 ortholog_one2one 1 retrogene
retro_hsap_219,
Nomascus leucogenys ENSNLEG00000017487 ortholog_one2one 1 retrogene
retro_nleu_2424,
Otolemur garnettii ENSOGAG00000011144 ortholog_one2one 1 retrogene
retro_ogar_2834,
Pongo abelii ENSPPYG00000019499 ortholog_one2one 1 retrogene
retro_pabe_283,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1290 88.93 81.76
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2. retro_cfam_1876 83.44 94.53
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Download FASTA sequences of all ENSCAFG00000003000 retrocopies