Parental gene:

ENSCAFG00000009698

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:28:13248123..13254468(-)


>ENSCAFG00000009698
ATGGCGGCGGCCAGGGCTTGGGTCCTGGGAGTCCGAAGGCTGCAAAGGGCTACCCGGACCGTGGTGCCGTTGGGTGCACG
GACAGCTTCGCATATTACCAAGGACATGCTCCCGGGGCCCTATCCCAAGACCCCGGAAGAACGGGCCGCCGCCGCCAAGA
AATATAATATGCGGGTAGAGGACTACGAACCGTACCCGGATGATGGCATGGGGTATGGCGACTATCCGAAGCTCCCTGAC
CGCTCACAGCAGGAGAGGGATCCATGGTATAACTGGGACCACTCAGACCTGAGGTTGAACTGGGGTGAACCGATGCACTG
GGACCTTGACATGTATATCAGGAACCGTGTGGACACATCACCCACACCCGTTTCCTGGAGTCTCATGTGTAAGCACCTCT
TCGGCTTCGTGGCCTTCATGCTGTTCATGTTTTGGGTTGGGGAGAATTACCGCACCTACCAGCCTGTGGGGCCAAAGCAG
TATCCTTATAATAATCTGTACCTGGAACGAGGCGGCGATCCCACCAAAGAGCCTGAGCCAGTGGTTCATTATGAGATCTG
A

Library Parental gene expression (RPM)
SRP012049_cerebellum 72 .28 RPM
SRP017611_brain 34 .54 RPM
SRP017611_kidney 129 .76 RPM
SRP017611_liver 27 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006651 ortholog_one2one 3 retrogenes
retro_amel_1460, retro_amel_1467, retro_amel_931,
Bos taurus ENSBTAG00000000091 ortholog_one2many 1 retrogene
retro_btau_1844,
Callithrix jacchus ENSCJAG00000037906 ortholog_one2many 1 retrogene
retro_cjac_870,
Dasypus novemcinctus ENSDNOG00000003661 ortholog_one2one 1 retrogene
retro_dnov_65,
Felis catus ENSFCAG00000006453 ortholog_one2one 2 retrogenes
retro_fcat_501, retro_fcat_856,
Homo sapiens ENSG00000166136 ortholog_one2many 3 retrogenes
retro_hsap_1363, retro_hsap_1772, retro_hsap_770,
Gorilla gorilla ENSGGOG00000027239 ortholog_one2one 3 retrogenes
retro_ggor_1062, retro_ggor_2240, retro_ggor_639,
Microcebus murinus ENSMICG00000001341 ortholog_one2one 1 retrogene
retro_mmur_859,
Myotis lucifugus ENSMLUG00000015094 ortholog_one2one 1 retrogene
retro_mluc_1830,
Macaca mulatta ENSMMUG00000006636 ortholog_one2one 5 retrogenes
retro_mmul_1098, retro_mmul_1232, retro_mmul_1620, retro_mmul_415, retro_mmul_753,
Monodelphis domestica ENSMODG00000019356 ortholog_one2one 1 retrogene
retro_mdom_1543,
Mustela putorius furo ENSMPUG00000016959 ortholog_one2one 1 retrogene
retro_mputfur_1259,
Mus musculus ENSMUSG00000025204 ortholog_one2many 2 retrogenes
retro_mmus_1995, retro_mmus_2909,
Nomascus leucogenys ENSNLEG00000014774 ortholog_one2one 3 retrogenes
retro_nleu_1068, retro_nleu_2810, retro_nleu_398,
Otolemur garnettii ENSOGAG00000030711 ortholog_one2many 3 retrogenes
retro_ogar_1237, retro_ogar_152, retro_ogar_2593,
Pongo abelii ENSPPYG00000002570 ortholog_one2one 3 retrogenes
retro_pabe_1131, retro_pabe_1541, retro_pabe_756,
Pan troglodytes ENSPTRG00000002851 ortholog_one2one 3 retrogenes
retro_ptro_1186, retro_ptro_539, retro_ptro_936,
Sus scrofa ENSSSCG00000006166 ortholog_one2one 2 retrogenes
retro_sscr_1092, retro_sscr_444,
Tupaia belangeri ENSTBEG00000000209 ortholog_one2one 8 retrogenes
retro_tbel_1872, retro_tbel_2950, retro_tbel_3122, retro_tbel_322, retro_tbel_3696, retro_tbel_4042, retro_tbel_4718, retro_tbel_540,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1405 73.79 55.38
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2. retro_cfam_1947 57.45 73.12
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Download FASTA sequences of all ENSCAFG00000009698 retrocopies