Parental gene: | PSME1, ENSCAFG00000011924 |
| Aliases: | None |
| Description: | proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) [Source:HGNC Symbol;Acc:9568] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 8:4130491..4136254(+) |
>ENSCAFG00000011924
ATGGCCACGCTCAGGGTCCAGCCTGAAGCCCAAGCCAAGGTGGACGTGTTCCGTGAAGACCTGTGTACCAAGACAGAGAA
CCTGCTGGGGAGCTACTTCCCCAAGAAGATTTCTGAGTTGGATGCATTTTTAAAGGAGCCAGCTCTCAATGAAGCCAACC
TGAGCAATCTGAAGGCCCCATTGGACATCCCAGTACCCGATCCAGTCAAGGAGAAAGAGAAAGAGGAACGAAAGAAACAG
CAGGAGAAGGAAGAAAAAGATGAAAAGAAGAAAGGGGAAGATGAAGACAAAGGTCCTCCCTGTGGCCCAGTGAACTGCAA
TGAGAAGATTGTGGTCCTCCTTCAGCGTCTAAAGCCTGAGATCAAGGATGTCATTGAGCAACTCAACCTGGTCACCACCT
GGTTGCAGCTACAGATACCTCGGATTGAAGATGGAAACAATTTTGGAGTGGCTGTCCAGGAGAAGGTGTTTGAGCTGATG
ACCGCTCTTCACACCAAGCTGGAAGGCTTCCACACTCAAATCTCCAAGTATTTCTCTGAGCGGGGTGATGCTGTGACCAA
AGCAGCCAAGCAGCCCCATGTGGGTGACTATCGGCAGCTGGTGCACGAGCTGGATGAGGCAGAGTACCGGGACATCCGGC
TGATGGTCATGGAGATCCGCAATGCTTATGTGAGGAAGCTGTATTATATGACATCATCTTGA
ATGGCCACGCTCAGGGTCCAGCCTGAAGCCCAAGCCAAGGTGGACGTGTTCCGTGAAGACCTGTGTACCAAGACAGAGAA
CCTGCTGGGGAGCTACTTCCCCAAGAAGATTTCTGAGTTGGATGCATTTTTAAAGGAGCCAGCTCTCAATGAAGCCAACC
TGAGCAATCTGAAGGCCCCATTGGACATCCCAGTACCCGATCCAGTCAAGGAGAAAGAGAAAGAGGAACGAAAGAAACAG
CAGGAGAAGGAAGAAAAAGATGAAAAGAAGAAAGGGGAAGATGAAGACAAAGGTCCTCCCTGTGGCCCAGTGAACTGCAA
TGAGAAGATTGTGGTCCTCCTTCAGCGTCTAAAGCCTGAGATCAAGGATGTCATTGAGCAACTCAACCTGGTCACCACCT
GGTTGCAGCTACAGATACCTCGGATTGAAGATGGAAACAATTTTGGAGTGGCTGTCCAGGAGAAGGTGTTTGAGCTGATG
ACCGCTCTTCACACCAAGCTGGAAGGCTTCCACACTCAAATCTCCAAGTATTTCTCTGAGCGGGGTGATGCTGTGACCAA
AGCAGCCAAGCAGCCCCATGTGGGTGACTATCGGCAGCTGGTGCACGAGCTGGATGAGGCAGAGTACCGGGACATCCGGC
TGATGGTCATGGAGATCCGCAATGCTTATGTGAGGAAGCTGTATTATATGACATCATCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 32 .23 RPM |
| SRP017611_kidney | 76 .07 RPM |
| SRP017611_liver | 40 .24 RPM |
| SRP012049_cerebellum | 65 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016433 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000021395 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000016855 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000005583 | ortholog_one2many | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000014712 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000022216 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019041 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000008620 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_246 | 59.04 | 79.40 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000011924 retrocopies