Parental gene: | SF1, ENSCAFG00000014239 |
| Aliases: | None |
| Description: | splicing factor 1 [Source:HGNC Symbol;Acc:12950] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 18:52380210..52397150(+) |
>ENSCAFG00000014239
ATGGCGACCGGAGCGAACGCCACGCCGCTGGACTTCCCAAGTAAGAAGCGGAAGAGGAGCCGCTGGAACCAAGATACAAT
GGAACAGAAGACAGTGATTCCAGGAATGCCTACAGTCATCCCCCCTGGACTTACTCGGGAACAAGAAAGAGCTTATATAG
TGCAACTGCAGATAGAAGACCTGACTCGTAAACTGCGCACAGGAGACCTGGGCATCCCCCCTAACCCTGAGGACAGGTCC
CCTTCCCCTGAGCCCATCTACAATAGCGAGGGGAAGCGGCTTAACACCCGCGAGTTCCGCACCCGCAAAAAGCTTGAAGA
GGAGCGGCACAACCTCATCACGGAAATGGTTGCCCTCAACCCTGATTTTAAGCCACCTGCAGATTACAAACCTCCAGCAA
CACGGGTGAGCGATAAAGTCATGATTCCACAAGATGAGTATCCTGAAATCAACTTTGTGGGGCTGCTGATTGGGCCCAGA
GGGAACACCTTGAAGAACATAGAGAAAGAGTGTAATGCCAAGATCATGATCCGAGGGAAAGGGTCTGTCAAAGAAGGGAA
AGTTGGCCGCAAAGATGGCCAGATGCTGCCTGGAGAAGATGAGCCGCTTCATGCCCTGGTTACTGCTAACACCATGGAGA
ATGTGAAGAAAGCTGTGGAACAGATAAGAAACATTCTGAAGCAGGGTATTGAGACCCCTGAGGACCAGAATGATCTACGG
AAGATGCAGCTTCGGGAGTTGGCTCGTTTAAATGGGACCCTTCGGGAAGATGATAACAGGATCTTGAGACCCTGGCAGAG
CTCAGAGACACGCAGCATTACCAATACCACAGTGTGTACCAAGTGTGGAGGGGCTGGCCACATTGCATCTGATTGCAAAT
TCCAAAGGCCTGGTGACCCCCAGTCAGCTCAGGATAAAGCACGGATGGATAAAGAGTATCTGTCCCTTATGGCTGAACTG
GGCGAAGCACCGGTGCCAGCATCTGTGGGTTCCACATCTGGGCCCGCCACCACGCCCCTGGCCAGTGCACCTCGGCCTGC
TGCTCCTGCCAACAACCCACCTCCACCGTCTCTCATGTCCACTACCCAGAGCCGCCCACCGTGGATGAATTCTGGCCCTT
CAGAGAGTCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGGCCTGGAGGTGGCCCCCACAGCTTCCCACACCCA
TTACCCAGCCTGACAGGTGGGCATGGTGGACATCCCATGCAGCACAACCCTAACGGACCCCCACCCCCTTGGATGCAGCC
ACCACCACCACCGATGAACCAGGGCCCACACCCACCTGGGCATCATGGCCCTCCTCCAATGGATCAGTACCTGGGAAGTA
CGCCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGGTATGATGCCACCGCCGCCTATGGGCATGATGCCACCG
CCGCCGCCGCCTCCCAGTGGGCAGCCCCCGCCCCCTCCCTCTGGTCCTCTTCCCCCATGGCAGCAGCAGCAGCAGCAGCC
TCCGCCACCCCCTCCGCCCAGCAGCAGTATGGCTTCCAGTACCCCCTTGCCATGGCAGCAAAATACGACGACTACCACCA
CGAGCGCTGGCACAGGGTCCATCCCGCCATGGCAACAGCAGCAGGCGGCTGCCGCAGCTTCTCCAGGAGCCCCTCAGATG
CAAGGCAACCCCACTATGGTGCCCCTGCCCCCCGGGGTCCAGCCGCCTCTGCCGCCCGGGGCCCCTCCCCCTCCGCCGCC
TCCGCCGCCTGGTTCCGCCGGCATGATGATCCCTCCCCGCGGCGGCGATGGCCCGAGCCATGAGAGTGAGGACTTTCCGC
GCCCATTGGTGACCCTTCCAGGCAGACAGCCTCAGCAGCGCCCCTGGTGGACAGGATGGTTCGGCAAAGCAGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 201 .13 RPM |
| SRP017611_brain | 102 .26 RPM |
| SRP017611_kidney | 69 .34 RPM |
| SRP017611_liver | 86 .58 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017828 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002780 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000009790 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_2148 | 69.59 | 67.24 | Please wait, loading  |
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Download FASTA sequences of all ENSCAFG00000014239 retrocopies