Parental gene:

PTPN1, ENSCJAG00000000531

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:44421527..44502711(+)


>ENSCJAG00000000531
ATGGAGATGGAAAAGGAGTTCGAGCAGATCGACAAGTCCGGGAGCTGGGCGGCCATTTACCAGGATATCCGACACGAAGC
CAGTGACTTCCCATGTAGAGTGGCCAAGCTTCCTAAGAACAAAAACCGAAATAGGTACAGAGATGTCAGTCCCTTTGACC
ATAGTCGGATTAAACTACATCAAGAAGATAACGACTATATCAATGCTAGTTTGATAAAAATGGAAGAAGCCCAAAGGAGT
TACATTCTTACCCAGGGTCCTTTGCCTAACACGTGTGGGCACTTTTGGGAGATGGTGTGGGAGCAGAAGAGCAGGGGTGT
CGTCATGCTTAACAGAGTGATGGAGAAAGGCTCGTTAAAATGTGCACAGTACTGGCCACAAAAAGAAGAAAAAGAAATGA
TCTTTGAAGACACAAATTTGAAATTAACATTGATTTCTGAAGATATCAAGTCATATTATACAGTTCGACAGCTAGAATTG
GAGAACCTTACAACTCAAGAAACTCGAGAGATCTTACATTTCCACTATACCACATGGCCTGACTTTGGAGTCCCCGAATC
GCCAGCCTCATTCTTGAACTTTCTTTTCAAAGTCCGAGAGTCGGGGTCACTCAGCCCGGAGCACGGCCCCGTGGTGGTGC
ACTGCAGTGCAGGCATCGGCAGGTCTGGGACCTTCTGTCTGGCTGATACCTGCCTCTTGCTGATGGACAAAAGGAAAGAC
CCTTCTTCCGTTGATATCAAGAAAGTGCTGTTAGAAATGAGGAAGTTTCGGATGGGGCTGATCCAGACGGCAGACCAGCT
GCGCTTCTCCTACCTGGCTGTGATTGAAGGGGCCAAATTCATCATGGGAGACTCTTCCGTGCAGGATCAGTGGAAGGAGC
TTTCCCATGAGGACGTGGAGCCCCCACCCGAGCACGTCCCACCACCTCCCCGGCCACCGAAACGAATCCTGGAGCCACAC
AATGGGAAATGCAGGGAGTTCTTCCCAAACCACCAATGGGTGAAGGATGAGACCGGGGAGGATAAAGCCTGCCCTGTCAA
GGAAGAAACAGGAAGCCCCTTAAATGCCACACCCTACAGCATGGAAAGCATGAGTCAAGACACTGAAGTTAGAAGTCGTG
TCGTGGGGGGAAGTCTTCGAGGTGCCCAGGCTGCCTTCCCAGCCCAAGGAGAGCCATCACCGCCCAAGGAGGAGGAGGAC
CATGCACTCACTCACTGGAAGCCCTTCCTGGTCAACATGTGCTTGGCTACAGTCCTCATGGCCTGCGCGTACCTGTGCTA
CAGGTTCCTGTTCAACAGCAACACATAG

Library Parental gene expression (RPM)
SRP051959_spleen 69 .66 RPM
SRP051959_skeletal_muscle 9 .89 RPM
SRP051959_lymph_node 44 .61 RPM
SRP051959_lung 43 .21 RPM
SRP051959_liver 17 .13 RPM
SRP051959_kidney 16 .26 RPM
SRP051959_heart 16 .38 RPM
SRP051959_colon 25 .85 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005102 within_species_paralog 1 retrogene
retro_cjac_1577,
Callithrix jacchus ENSCJAG00000012464 other_paralog 1 retrogene
retro_cjac_1051,
Ictidomys tridecemlineatus ENSSTOG00000025542 ortholog_one2many 1 retrogene
retro_itri_17,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4108 90.34 100.00
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Download FASTA sequences of all ENSCJAG00000000531 retrocopies