Parental gene: | C19orf40, ENSCJAG00000000728 |
| Aliases: | None |
| Description: | chromosome 19 open reading frame 40 [Source:HGNC Symbol;Acc:28467] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:27389784..27396258(+) |
>ENSCJAG00000000728
ATGGAAAGGAACCCCTCTGATGGCACGGGTCCCGTGCATGTGCCTTTGGGGCAGGTTGTGGCGAATGAGAAATGGCGCGG
GTCACAGCTGGCGCAGGAGATGCAAGGGAAAATTAAGCTCATTTTCGAGGATGGCTTAACACCAGACTTTTATCTGTCGA
ACAGATGCTGCATTCTTTATGTCACTGAAGCTGATTTGGTGGCAGGAAATGGCTACAGAAAGAGGCTTGTTCGGGTTAGA
AATTCCAATAATATTCAAGGAATTGTAGTTGTTGAAAAAACCCAGATGAGTGAACAATACTTCCCAGCCTTACAGAAGTT
TACTGTGCTGGACCTTGGAATGGTGCTGCTTCCAGTGGCCAACCAGATGGAAGCGTCCTGCCTCATCATCCAGTTGGTTC
AAGAGCAAATCAAAGAGCCCAGTAAGAACCCTCTTCTGGGGAAGAAACGGGCCCTGCTGCTGTCTGAGCCATCCCTACTT
CGAACCGTGCAGCAGATCCCAGGCGTTGGAAAAGTTAAAGCTCCCCTTCTGCTCCAGAAGTTTCCAAGCATCCAGAAACT
GAGTAATGCTTCCATTCGGGAACTAGAGCAGGTGGTCGGACAAGCAGTGGCACAGCAGATCCATGCCTTCTTCACACAGC
CCAGGTGA
ATGGAAAGGAACCCCTCTGATGGCACGGGTCCCGTGCATGTGCCTTTGGGGCAGGTTGTGGCGAATGAGAAATGGCGCGG
GTCACAGCTGGCGCAGGAGATGCAAGGGAAAATTAAGCTCATTTTCGAGGATGGCTTAACACCAGACTTTTATCTGTCGA
ACAGATGCTGCATTCTTTATGTCACTGAAGCTGATTTGGTGGCAGGAAATGGCTACAGAAAGAGGCTTGTTCGGGTTAGA
AATTCCAATAATATTCAAGGAATTGTAGTTGTTGAAAAAACCCAGATGAGTGAACAATACTTCCCAGCCTTACAGAAGTT
TACTGTGCTGGACCTTGGAATGGTGCTGCTTCCAGTGGCCAACCAGATGGAAGCGTCCTGCCTCATCATCCAGTTGGTTC
AAGAGCAAATCAAAGAGCCCAGTAAGAACCCTCTTCTGGGGAAGAAACGGGCCCTGCTGCTGTCTGAGCCATCCCTACTT
CGAACCGTGCAGCAGATCCCAGGCGTTGGAAAAGTTAAAGCTCCCCTTCTGCTCCAGAAGTTTCCAAGCATCCAGAAACT
GAGTAATGCTTCCATTCGGGAACTAGAGCAGGTGGTCGGACAAGCAGTGGCACAGCAGATCCATGCCTTCTTCACACAGC
CCAGGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 1 .76 RPM |
| SRP051959_skeletal_muscle | 0 .15 RPM |
| SRP051959_lymph_node | 1 .62 RPM |
| SRP051959_lung | 1 .37 RPM |
| SRP051959_liver | 1 .13 RPM |
| SRP051959_kidney | 1 .97 RPM |
| SRP051959_heart | 0 .79 RPM |
| SRP051959_colon | 1 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Cavia porcellus | ENSCPOG00000011965 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000014134 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000002716 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000006401 | ortholog_one2one | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013287 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000017939 | ortholog_one2one | 1 retrogene | |
| Procavia capensis | ENSPCAG00000009727 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000016372 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1011 | 81.99 | 74.88 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3952 | 80.09 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000728 retrocopies