RetrogeneDB ID: | retro_dnov_2382 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_69475:38618..39145(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C19orf40 | ||
Ensembl ID: | ENSDNOG00000014134 | ||
Aliases: | None | ||
Description: | chromosome 19 open reading frame 40 [Source:HGNC Symbol;Acc:28467] |
Percent Identity: | 59.24 % |
Parental protein coverage: | 82.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | KLTFEDG-LTPVDFHLSNRSCVLYITEADLVAGNAYRKRLVRVRNASNLQGIVLVEKTQMSEQYFPAVQK |
.L.FE.G.LT.V..H...RSC.LYIT.AD.VAGN..RKRL.R..N..NLQGI..V.KTQ..E....A..K | |
Retrocopy | ELSFENG<LTLVNSHSPRRSCILYITKADAVAGNG*RKRLCRCKNGRNLQGIAAVVKTQSTEPSCSALEK |
Parental | FTVLDLGMVLLPVASQVEAACLIVQLVQEQTKEHSKNPFLR-KKRA-LLSEPSLLRTVQ-QIPGVGKVK- |
...LDLGMV.LPVA.Q.EA.CLI.Q..QEQTK..SK.P.LR.K..A.LL.EPSLL.T...QIPGVGK... | |
Retrocopy | AAGLDLGMVSLPVARQIEASCLIIQFIQEQTKKLSKSPVLR<KNQA<LLAEPSLLPTAR<QIPGVGKAEP |
Parental | AP-LLLQKFPSIQQLSNASIQELEQVVGQ-AAAQQIYVFFTQSR |
.P.LLLQKFPS.Q.L..ASIQ..EQ...Q.AA.QQ....FTQ.R | |
Retrocopy | SP>LLLQKFPSTQPLRSASIQQREQLGTQ<AA-QQSHALFTQAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 5 .64 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .74 RPM |
SRP012922_heart | 0 .00 RPM | 0 .46 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .74 RPM |
SRP012922_liver | 0 .00 RPM | 2 .17 RPM |
SRP012922_lung | 0 .00 RPM | 3 .36 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 0 .87 RPM |
SRP012922_spleen | 0 .00 RPM | 6 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000728 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011965 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014134 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000002716 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006401 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000013287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017939 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009727 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000016372 | 1 retrocopy |