Parental gene:

MSL3, ENSCJAG00000001061

Aliases:None
Description:male-specific lethal 3 homolog (Drosophila) [Source:HGNC Symbol;Acc:7370]
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:9719912..9737320(+)


>ENSCJAG00000001061
CTCTCCTCCTGTGCGGCCAGTGCCGGGTGGGCTCCTGTTGGATGCCCTGGTCGTCCGATCCAGATTGTTGATGTTATTGT
TGGGAAAGACGAAAAAGGCAGGAAGATCCCAGAATATCTGATCCATTTTAATGGTTGGAACAGAAGCTGGGATAGATGGG
CAGCCGAAGATCATGTGCTTCGTGATACCGATGAAAATCGTAGATTACAGCGTAAATTGGCAAGAAAAGCTGTAGCTCGC
CTGAGGAGCACAGGAAGAAAGAAGAAGCGCTGCAGGTTGCCTGGTGTTGACTCTGTCTTAAAAGGCCTCCCCAGTGAAGA
GAAAGATGAAAATGACGAAAACTCATTAAACAGTTCCTCTGACAGTGCTGAAGACAAGGATGAAGAAATAAGTGAAGAAA
GTGATATTGAAGAAAAGACTGAAGTGAAACAAGAACCGGAGCTTCAAACAAAAAGGGAAATGGAAGAAAGAACAATAACT
ATAGAAATTCCTGAAGTTCTGAAGAAGCAGCTGGAGGATGATTGTTACTACATTAATAGGAGGAAACGGTTAGTGAAGCT
TCCATGCCAGACTAACATCATAACCATTTTGGAATCCTATGTGAAACATTTCGCTATCAATGCAGCCTTTTCAGCCAATG
AGAGACCTCGTCACCATCACGTTATGCCACATGCCAACATGAACGTGCATTATATCCCAGCAGAAAGGAATGTTGACCTT
TGTAAGGAGATGGTGGATGGATTACGAATAACCTTTGATTACACTCTCCCATTGGTTTTACTGTATCCATATGAACAAGC
TCAGTATAAAAAGGTGACTTCGTCTAAGTTTTTTCTTCCGATTAAGGAGAGTGCCACAAGCACTGCCAGGAGCCAGGAGG
AGCTCTCTCCCAGCCCCCCTTTGTTGAATCCATCCACGCCACAGTCCACAGAGAGTCAGCCGACCACCGGTGAACCAGCC
ACCCCCAAAAGGCGCAAAGCTGAGCCAGAAGCATTGCAGTCTCTGAGGCGGTCCACGCGCCACACTACTAACTGTGACAG
GCTTTCTGAGAGCAGCGCTTCCCCTCAGCCCAAGCGCAGGCAGCAGGACACGTCCGCCAGCATGCCCAAGCTCTTCCTGC
ACCTCGAAAAGAAGACACCTGTGCATAGCAGATCATCTTCACCTATTCCTCTGACTCCCAGCAAGGAAGGGAGTGCTGTG
TTTGCTGGCTTTGAAGGGAGAAGAACTAATGAAATAAATGAGGTCCTCTCCTGGAAGCTCGTGCCTGACCATTATCCCCC
AGGTGACCAGCCACCACCACCCTCTTACATTTATGGGGCACAACATTTGCTGCGATTGTTTGTAAAACTTCCAGAAATCC
TTGGAAAGATGTCCTTTTCTGAGAAGAATCTGAAGGCTTTATTGAAGCACTTTGATCTCTTTTTGAGGTTTTTAGCGGAA
TACCACGATGACTTCTTCCCAGAGTCGGCTTATGTCGCCGCCTGTGAGGCACATTACAGCACCAAGAACCCCCGCGCAAT
TTATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 9 .79 RPM
SRP051959_skeletal_muscle 5 .33 RPM
SRP051959_lymph_node 9 .06 RPM
SRP051959_lung 12 .30 RPM
SRP051959_liver 4 .61 RPM
SRP051959_kidney 11 .85 RPM
SRP051959_heart 7 .23 RPM
SRP051959_colon 5 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009278 ortholog_one2many 1 retrogene
retro_btau_883,
Cavia porcellus ENSCPOG00000004692 ortholog_many2many 5 retrogenes
retro_cpor_1423, retro_cpor_1424, retro_cpor_1425, retro_cpor_1426, retro_cpor_95,
Homo sapiens ENSG00000005302 ortholog_one2one 2 retrogenes
retro_hsap_2401, retro_hsap_4097,
Gorilla gorilla ENSGGOG00000006582 ortholog_one2one 2 retrogenes
retro_ggor_1820, retro_ggor_2749,
Macaca mulatta ENSMMUG00000002689 ortholog_one2one 2 retrogenes
retro_mmul_2362, retro_mmul_972,
Monodelphis domestica ENSMODG00000017350 ortholog_one2many 1 retrogene
retro_mdom_1422,
Pongo abelii ENSPPYG00000020123 ortholog_one2one 2 retrogenes
retro_pabe_2166, retro_pabe_3353,
Pan troglodytes ENSPTRG00000021662 ortholog_one2one 2 retrogenes
retro_ptro_1751, retro_ptro_2778,
Pteropus vampyrus ENSPVAG00000005000 ortholog_one2many 1 retrogene
retro_pvam_203,
Sorex araneus ENSSARG00000008477 ortholog_one2many 1 retrogene
retro_sara_139,
Tarsius syrichta ENSTSYG00000012788 ortholog_one2many 4 retrogenes
retro_tsyr_1079, retro_tsyr_1649, retro_tsyr_1706, retro_tsyr_948,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1490 65.23 98.62
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000001061 retrocopies