Parental gene:

SYCP3, ENSCJAG00000001658

Aliases:None
Description:synaptonemal complex protein 3 [Source:HGNC Symbol;Acc:18130]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:91885867..91897714(-)


>ENSCJAG00000001658
ATGGTGTCCTCCGGAAAAAAGTATTCCAGGAAATCTGGGAAGCCATCCATGGAAGATCAGTTTACCAGAGCCTATGACTT
TGAGACTGAAGAAAAGAAAGATCCGAGTGGTTCAGAGGAAGATGTTACTGAAGGGAAGACTACAGTCATTGAGAAACCTA
GGAAGAAAAGATCTTCTGCAGGAGTAGTTGAAGATATGGGGTGTGAAGTACAGAATATGCTGGAAGGAGTTGGAGTTGAC
ATTAACAAGGCTCTTCTTGCCAAGAGAAAGAGACTAGAAATGTATACCAAGGCTTCTCTCAAAACTAGCAACCAGAAAAT
CGAACATGTTTGGAAAACACAACAAGATCAAAGGCAGAAACTTAACCAAGAATATTCTCAGCAGTTTCTGACTTTGTTTC
AGCAGTGGGATTTAGATATGCAGAAAGCTGAAGAACAAGAAGAAAAAATACTTAATATGTTTCGACAGCAACAAAAGATT
CTTCAACAATCTAGAATTGTTCAGAGCCAGAGACTGAAAACAATTAGACAGTTATATGAGCAGTTCATAAAGAGTATGGA
AGAGTTGGAGAAGAATCATGATAATCTACTTACTGGTGCACAAAATGAATTTAAAAAAGAAATGGCTATGTTGCAGAAAA
AAATTATGATGGAAACTCAGCAGCAAGAGATAGCATGTGTTCGGAAGTCTCTTCAATCCATGTTATTCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 1 .13 RPM
SRP051959_skeletal_muscle 0 .28 RPM
SRP051959_lymph_node 0 .84 RPM
SRP051959_lung 0 .91 RPM
SRP051959_liver 1 .00 RPM
SRP051959_kidney 1 .44 RPM
SRP051959_heart 1 .12 RPM
SRP051959_colon 1 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000013389 ortholog_one2one 2 retrogenes
retro_chof_1384, retro_chof_2693,
Cavia porcellus ENSCPOG00000001202 ortholog_one2one 1 retrogene
retro_cpor_686,
Dasypus novemcinctus ENSDNOG00000017387 possible_ortholog 2 retrogenes
retro_dnov_2623, retro_dnov_739,
Dasypus novemcinctus ENSDNOG00000017624 ortholog_one2many 3 retrogenes
retro_dnov_2294, retro_dnov_2402, retro_dnov_420,
Echinops telfairi ENSETEG00000007664 ortholog_one2many 1 retrogene
retro_etel_1510,
Myotis lucifugus ENSMLUG00000010711 ortholog_one2one 2 retrogenes
retro_mluc_1098, retro_mluc_1839,
Mus musculus ENSMUSG00000067764 possible_ortholog 1 retrogene
retro_mmus_1085,
Mus musculus ENSMUSG00000072479 possible_ortholog 1 retrogene
retro_mmus_1782,
Otolemur garnettii ENSOGAG00000024543 ortholog_one2one 1 retrogene
retro_ogar_633,
Rattus norvegicus ENSRNOG00000017224 possible_ortholog 1 retrogene
retro_rnor_1728,
Ictidomys tridecemlineatus ENSSTOG00000001853 ortholog_one2one 1 retrogene
retro_itri_931,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2710 99.15 100.00
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Download FASTA sequences of all ENSCJAG00000001658 retrocopies