Parental gene: | FXN, ENSCJAG00000001695 |
| Aliases: | None |
| Description: | frataxin [Source:HGNC Symbol;Acc:3951] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:99842114..99910811(+) |
>ENSCJAG00000001695
ATGTGGACTCTCGGCCGCCGCTCAGCCGCGGGCTTCCTACTTTGGCCGTCGTACACCAGCCCGGCCCAGGTCCAGACTGT
CACCCGGGCCCCGCGGCCGGGGGAGTTGGCCCAGCTCTGCGACTGCCGCGCCCTGCACACCGGAATCGCAAAGATCTGCG
CGTCCCGCCACGCCAGTTTGAATCTCCGTGGTCTCAACCAGATTCAGAATGTCAAAAAGCAGAGTGCCTATTTGATGAAT
TTGAGGAAAACGGGAACTTTGGGTCACCCAGGCTCTCTAGATGAGACCACCTATGAAAGACTAGCAGAGGAAACGCTGGA
CTCCTTAGCAGAGTTTTTTGAAGACCTTGCAGACAAGCCATACACATTTGAAGACTATGATGTTTCCTTTGGGAGTGGTG
TCTTAACTGTTAAACTGGGTGGAGATCTCGGAACTTATGTGATCAACAAGCAGACGCCAAACAAGCAAATCTGGCTATCA
TCTCCATCCAGTGGACCCAAGCGTTACGACTGGACTGGGAAAAACTGGGTATACTCCCACGACGGCGTGTCCCTCCATGA
GCTTCTGGCCGCAGAGCTCACTAAAGCCTTAAAAACCAAACTGGACTTGTCTTACTTGGCCTATTCCGGAAAAGACGCTT
GA
ATGTGGACTCTCGGCCGCCGCTCAGCCGCGGGCTTCCTACTTTGGCCGTCGTACACCAGCCCGGCCCAGGTCCAGACTGT
CACCCGGGCCCCGCGGCCGGGGGAGTTGGCCCAGCTCTGCGACTGCCGCGCCCTGCACACCGGAATCGCAAAGATCTGCG
CGTCCCGCCACGCCAGTTTGAATCTCCGTGGTCTCAACCAGATTCAGAATGTCAAAAAGCAGAGTGCCTATTTGATGAAT
TTGAGGAAAACGGGAACTTTGGGTCACCCAGGCTCTCTAGATGAGACCACCTATGAAAGACTAGCAGAGGAAACGCTGGA
CTCCTTAGCAGAGTTTTTTGAAGACCTTGCAGACAAGCCATACACATTTGAAGACTATGATGTTTCCTTTGGGAGTGGTG
TCTTAACTGTTAAACTGGGTGGAGATCTCGGAACTTATGTGATCAACAAGCAGACGCCAAACAAGCAAATCTGGCTATCA
TCTCCATCCAGTGGACCCAAGCGTTACGACTGGACTGGGAAAAACTGGGTATACTCCCACGACGGCGTGTCCCTCCATGA
GCTTCTGGCCGCAGAGCTCACTAAAGCCTTAAAAACCAAACTGGACTTGTCTTACTTGGCCTATTCCGGAAAAGACGCTT
GA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 2 .31 RPM |
| SRP051959_skeletal_muscle | 4 .26 RPM |
| SRP051959_lymph_node | 1 .48 RPM |
| SRP051959_lung | 2 .38 RPM |
| SRP051959_liver | 2 .79 RPM |
| SRP051959_kidney | 3 .37 RPM |
| SRP051959_heart | 4 .24 RPM |
| SRP051959_colon | 1 .42 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006915 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000005107 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000024066 | ortholog_one2one | 3 retrogenes | |
| Equus caballus | ENSECAG00000019174 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000165060 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007636 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000000357 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000009619 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000059363 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031105 | ortholog_one2many | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000015213 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010336 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_813 | 80.18 | 52.11 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1562 | 66.10 | 53.99 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1927 | 54.55 | 54.93 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3939 | 84.58 | 99.53 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000001695 retrocopies