Parental gene:

EHD1, ENSCJAG00000002660

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:11:120465882..120494178(-)


>ENSCJAG00000002660
ATGTTCAGCTGGGTCAGCAAGGATGCCCGCCGCAAGAAGGAGCCGGAGCTCTTCCAGACGGTGGCCGAGGGGCTGCGGCA
GCTGTACGCGCAGAAGCTGCTGCCCCTGGAGGAGCACTACCGCTTCCACGAGTTCCACTCGCCCGCGCTGGAGGACGCTG
ACTTCGACAACAAGCCCATGGTGCTCCTGGTGGGCCAGTACAGCACTGGCAAGACCACCTTCATCCGGCACCTGATCGAG
CAGGACTTCCCGGGGATGCGCATCGGGCCCGAGCCCACCACCGACTCCTTCATCGCCGTCATGCACGGCCCCACCGAGGG
CGTGGTGCCGGGTAACGCGCTCGTGGTGGACCCGCGGCGCCCCTTCCGCAAGCTCAACGCCTTCGGCAACGCTTTCCTCA
ACAGGTTCATGTGTGCCCAGCTGCCCAACCCCGTCCTGGACAGCATCAGTATCATCGACACCCCCGGGATCCTGTCCGGA
GAGAAGCAGCGCATCAGCAGAGGCTATGACTTTGCAGCTGTCCTGGAGTGGTTCGCCGAGCGGGTGGACCGCATCATCCT
GCTCTTCGATGCCCATAAGCTGGACATCTCTGATGAGTTCTCGGAAGTGATCAAGGCTCTGAAGAACCACGAGGACAAGA
TCCGCGTGGTATTGAACAAGGCAGACCAGATCGAGACGCAGCAGCTGATGCGGGTGTACGGGGCCCTCATGTGGTCCCTG
GGCAAGATCATCAACACCCCTGAGGTGGTCAGAGTCTACATCGGCTCCTTTTGGTCCCACCCGCTCCTCATCCCCGACAA
CCGCAAGCTCTTTGAGGCCGAGGAGCAGGACCTCTTCAAGGACATCCAGTCTCTGCCCCGAAACGCTGCCCTCAGGAAGC
TCAATGACCTGATCAAGCGGGCGCGGCTGGCCAAGGTTCATGCCTACATCATCAGCTCCCTCAAGAAGGAGATGCCCAAT
GTCTTTGGGAAAGAGAGCAAAAAGAAAGAGCTGGTGAACAACCTGGGAGAGATCTACCAGAAGATCGAGCGTGAGCACCA
GATCTCCCCCGGTGACTTCCCAAGCCTCCGCAAGATGCAGGAACTCCTGCAGACTCAGGACTTCAACAAGTTCCAGGCCC
TGAAGCCCAAGCTGCTGGACACGGTGGACGACATGCTGGCCAACGACATCGCACGGCTGATGGTGATGGTGCGGCAGGAG
GAGTCCCTGATGCCTTCCCAGGTGGTCAAGGGCGGCGCCTTTGATGGTACCATGAACGGGCCCTTCGGGCACGGCTACGG
TGAGGGGGCCGGCGAGGGCATTGATGACGTCGAGTGGGTGGTGGGCAAAGACAAGCCCACCTATGACGAGATCTTCTACA
CACTGTCCCCCGTCAACGGCAAGATCACGGGCGCCAACGCCAAGAAGGAGATGGTGAAGTCCAAGCTACCCAACACCGTG
CTGGGGAAGATCTGGAAGCTGGCAGACGTGGACAGGGACGGGCTGCTGGACGACGAGGAGTTTGCGCTGGCCAACCACCT
CATCAAAGTCAAGCTGGAGGGCCACGAGCTGCCTGCCGACCTGCCCCCGCACCTGGTGCCGCCCTCCAAACGCAGGCACG
AGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 19 .87 RPM
SRP051959_skeletal_muscle 20 .94 RPM
SRP051959_lymph_node 29 .02 RPM
SRP051959_lung 22 .04 RPM
SRP051959_liver 8 .53 RPM
SRP051959_kidney 25 .80 RPM
SRP051959_heart 16 .21 RPM
SRP051959_colon 26 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014128 ortholog_one2one 1 retrogene
retro_cfam_1713,
Callithrix jacchus ENSCJAG00000007772 other_paralog 1 retrogene
retro_cjac_3080,
Callithrix jacchus ENSCJAG00000013985 other_paralog 1 retrogene
retro_cjac_1122,
Sarcophilus harrisii ENSSHAG00000005706 possible_ortholog 1 retrogene
retro_shar_423,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_559 83.81 54.31
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000002660 retrocopies