Parental gene: | ENSCJAG00000003670 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 22:41570319..41585365(+) |
>ENSCJAG00000003670
ATGGCGGCAGCCGAGGCCGCGAACTGCATCATGGAGGCCTGGATGGGGGAGTCAGCCCGAAGCAGCGAGAAGCCCAATGC
TGAGGACATGACGCAAGATTACTACTTTGATTCCTACGCCCACTTCGTATCCACGAGGGAGATGCTGAAGGATGAGGTGC
GCACCCTCACCTACCGCAACTCCATGTTTCACAATCGGCACCTTTTCAAGGACAAAGTGGTGCTGGACGTGGGCTCGGGC
ACTGGTATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGAAAGGTCATTGGGATCGAGTGTTCCAGTATCTCTGATTA
TGCGGTGAAGATCGTCAAAGCTAACAAGTTAGACCACGTGGTGACCATCATCAAGGGGAAGGTGGAGGAGGTGGAGCTCC
CGGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGCCTCTTTTATGAGTCCATGCTCAACACCGTGCTC
TATGCCCGAGACAAGTGGCTGGCGCCCGATGGCCTCATCTTCCCAGACCGAGCTACGCTGTACGTGACGGCCATCGAGGA
CCGGCAGTACAAAGACTACAAGATCCACTGGTGGGAGAATGTGTATGGCTTCGACATGTCTTGCATCAAAGATGTGGCCA
TCAAGGAGCCCCTAGTGGACGTGGTGGACCCAAAACAGCTGGTCACCAACGCCTGCCTCATAAAGGAGGTGGACATCTAC
ACTGTCAAGGTGGAAGACCTGACCTTCACTTCGCCGTTCTGCCTGCAAGTGAAGCGGAATGACTACGTGCATGCCCTGGT
GGCCTACTTCAACATCGAGTTCACACGCTGCCACAAGAGGACCGGCTTCTCCACCAGCCCGGAGTCCCCGTACACGCACT
GGAAGCAAACGGTGTTCTACATGGAGGACTACCTGACCGTGAAGACGGGTGAGGAGATCTTCGGCACCATCGGCATGCGG
CCCAACGCCAAGAACAACCGGGACCTGGACTTCACCATCGACTTGGACTTCAAGGGCCAGCTGTGCGAGCTGTCCTGCTC
CACCGACTACCGGATGCGCTGA
ATGGCGGCAGCCGAGGCCGCGAACTGCATCATGGAGGCCTGGATGGGGGAGTCAGCCCGAAGCAGCGAGAAGCCCAATGC
TGAGGACATGACGCAAGATTACTACTTTGATTCCTACGCCCACTTCGTATCCACGAGGGAGATGCTGAAGGATGAGGTGC
GCACCCTCACCTACCGCAACTCCATGTTTCACAATCGGCACCTTTTCAAGGACAAAGTGGTGCTGGACGTGGGCTCGGGC
ACTGGTATCCTCTGCATGTTTGCTGCCAAGGCCGGGGCCCGAAAGGTCATTGGGATCGAGTGTTCCAGTATCTCTGATTA
TGCGGTGAAGATCGTCAAAGCTAACAAGTTAGACCACGTGGTGACCATCATCAAGGGGAAGGTGGAGGAGGTGGAGCTCC
CGGTGGAGAAGGTGGACATCATCATCAGCGAGTGGATGGGCTACTGCCTCTTTTATGAGTCCATGCTCAACACCGTGCTC
TATGCCCGAGACAAGTGGCTGGCGCCCGATGGCCTCATCTTCCCAGACCGAGCTACGCTGTACGTGACGGCCATCGAGGA
CCGGCAGTACAAAGACTACAAGATCCACTGGTGGGAGAATGTGTATGGCTTCGACATGTCTTGCATCAAAGATGTGGCCA
TCAAGGAGCCCCTAGTGGACGTGGTGGACCCAAAACAGCTGGTCACCAACGCCTGCCTCATAAAGGAGGTGGACATCTAC
ACTGTCAAGGTGGAAGACCTGACCTTCACTTCGCCGTTCTGCCTGCAAGTGAAGCGGAATGACTACGTGCATGCCCTGGT
GGCCTACTTCAACATCGAGTTCACACGCTGCCACAAGAGGACCGGCTTCTCCACCAGCCCGGAGTCCCCGTACACGCACT
GGAAGCAAACGGTGTTCTACATGGAGGACTACCTGACCGTGAAGACGGGTGAGGAGATCTTCGGCACCATCGGCATGCGG
CCCAACGCCAAGAACAACCGGGACCTGGACTTCACCATCGACTTGGACTTCAAGGGCCAGCTGTGCGAGCTGTCCTGCTC
CACCGACTACCGGATGCGCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 11 .47 RPM |
| SRP051959_skeletal_muscle | 20 .09 RPM |
| SRP051959_lymph_node | 14 .59 RPM |
| SRP051959_lung | 11 .83 RPM |
| SRP051959_liver | 7 .69 RPM |
| SRP051959_kidney | 12 .80 RPM |
| SRP051959_heart | 18 .26 RPM |
| SRP051959_colon | 11 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Danio rerio | ENSDARG00000010246 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000006081 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000126457 | possible_ortholog | 1 retrogene | |
| Gasterosteus aculeatus | ENSGACG00000004897 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000000503 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003029 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000011938 | possible_ortholog | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000026109 | possible_ortholog | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_764 | 90.81 | 52.41 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1800 | 79.33 | 58.64 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1979 | 90.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000003670 retrocopies