Parental gene: | FDFT1, ENSCJAG00000003988 |
| Aliases: | None |
| Description: | farnesyl-diphosphate farnesyltransferase 1 [Source:HGNC Symbol;Acc:3629] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 13:6628940..6756995(-) |
>ENSCJAG00000003988
GGGCGGAGAGTCCTCGTGGTGGGCCCGCCCCCTTTCAGACCGCCCCGCGCCGTGCCTCCTACCCAGGTCTGGCCTGACTG
GGAGCCTGAAGACCGCAGAGTGAACGCCGAGCCCGGGAGCCGCCTGCCCCACCGCCTGCCCCAGTCCCACTCCCACTCCT
GCTCGTCAACGTCTCCCAGCGCCGTGTGTCTTGTCTGCCCGCAGGACTCGCTCAGCAGCAGCCTGAAAACTTGCTACACG
TATCTGAATCAGACGAGTCGCAGTTTCGCAGCTGTTATCCAGGCGCTGGATGGGGAAATGCGCAATGCAGTGTGCATATT
TTATCTGGTCCTCCGAGCTCTGGACACGCTGGAAGATGACATGACCATCAGTGTGGAGAAGAAGGTCCCGCTGTTACACA
ACTTCCACTCTTTCCTTTACCAGCCAGACTGGCGGTTCACGGAGAGCAAGGAGAAGGACCGCCAGGTGCTGGAGGACTTC
CCAACGATCTCCCTCGAGTTTAGAAATCTGGCTGAGAAATACCAAACGGTGATCGCTGACATTTGCCGGAGAATGGGAAT
TGGGATGGCAGAGTTTTTGAATAAGCATGTGACCTCTGAACAGGAGTGGGACAAGTACTGCCACTATGTTGCTGGGCTGG
TAGGAATTGGCCTTTCCCGTCTCTTCTCGGCCTCAGAGTTCGAAGACCCCTTAGTTGGTGAAGATACAGAACGTGCCAAC
TCCATGGGCCTGTTTCTGCAGAAAACAAACATCATTCGTGACTATCTGGAAGACCAGCAAGAAGGAAGAGAGTTTTGGCC
TCAAGAGGTTTGGAGCAGGTATGTTAAGAAGCTGGGGGATTTTGCCAAGCCGGAGAATATTGAGTTGGCCGTGCAGTGCC
TGAATGAACTTATAACCAACGCGCTGCACCACATCCCAGACGTCATCACCTACCTTTCGAGACTCAGAAACCAGAGCGTG
TTTAACTTCTGTGCTATCCCACAGGTGATGGCCATTGCCACTTTGGCTGCCTGTTACAATAACCAGCAGGTGTTCAGAGG
GGTAGTGAAGATTCGGAAAGGGCAAGCCGTGACCCTGATGATGGATGCCACCAACATGCCAGCTGTCAAAGCCATCATAT
ATCAGTATATGGAAGAGATTTACCATAGAATCCCCGACTCAGACCCATCTTCCAGTAAAACGAGGCAGATCATCTCCACC
ATCCGGACGCAGAATCTTCCCAACTGTCAGCTGATCTCCCGAAGCCACTACTCCCCCATCTACCTGTCCTTTGTCATGCT
CTTGGCTGCCCTGAGCTTGCAGTACCTGACCACACTCTCCCAGGTCACGGAAGACTATGTTCAGACTGGAGAACACTGA
GGGCGGAGAGTCCTCGTGGTGGGCCCGCCCCCTTTCAGACCGCCCCGCGCCGTGCCTCCTACCCAGGTCTGGCCTGACTG
GGAGCCTGAAGACCGCAGAGTGAACGCCGAGCCCGGGAGCCGCCTGCCCCACCGCCTGCCCCAGTCCCACTCCCACTCCT
GCTCGTCAACGTCTCCCAGCGCCGTGTGTCTTGTCTGCCCGCAGGACTCGCTCAGCAGCAGCCTGAAAACTTGCTACACG
TATCTGAATCAGACGAGTCGCAGTTTCGCAGCTGTTATCCAGGCGCTGGATGGGGAAATGCGCAATGCAGTGTGCATATT
TTATCTGGTCCTCCGAGCTCTGGACACGCTGGAAGATGACATGACCATCAGTGTGGAGAAGAAGGTCCCGCTGTTACACA
ACTTCCACTCTTTCCTTTACCAGCCAGACTGGCGGTTCACGGAGAGCAAGGAGAAGGACCGCCAGGTGCTGGAGGACTTC
CCAACGATCTCCCTCGAGTTTAGAAATCTGGCTGAGAAATACCAAACGGTGATCGCTGACATTTGCCGGAGAATGGGAAT
TGGGATGGCAGAGTTTTTGAATAAGCATGTGACCTCTGAACAGGAGTGGGACAAGTACTGCCACTATGTTGCTGGGCTGG
TAGGAATTGGCCTTTCCCGTCTCTTCTCGGCCTCAGAGTTCGAAGACCCCTTAGTTGGTGAAGATACAGAACGTGCCAAC
TCCATGGGCCTGTTTCTGCAGAAAACAAACATCATTCGTGACTATCTGGAAGACCAGCAAGAAGGAAGAGAGTTTTGGCC
TCAAGAGGTTTGGAGCAGGTATGTTAAGAAGCTGGGGGATTTTGCCAAGCCGGAGAATATTGAGTTGGCCGTGCAGTGCC
TGAATGAACTTATAACCAACGCGCTGCACCACATCCCAGACGTCATCACCTACCTTTCGAGACTCAGAAACCAGAGCGTG
TTTAACTTCTGTGCTATCCCACAGGTGATGGCCATTGCCACTTTGGCTGCCTGTTACAATAACCAGCAGGTGTTCAGAGG
GGTAGTGAAGATTCGGAAAGGGCAAGCCGTGACCCTGATGATGGATGCCACCAACATGCCAGCTGTCAAAGCCATCATAT
ATCAGTATATGGAAGAGATTTACCATAGAATCCCCGACTCAGACCCATCTTCCAGTAAAACGAGGCAGATCATCTCCACC
ATCCGGACGCAGAATCTTCCCAACTGTCAGCTGATCTCCCGAAGCCACTACTCCCCCATCTACCTGTCCTTTGTCATGCT
CTTGGCTGCCCTGAGCTTGCAGTACCTGACCACACTCTCCCAGGTCACGGAAGACTATGTTCAGACTGGAGAACACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 7 .73 RPM |
| SRP051959_skeletal_muscle | 34 .96 RPM |
| SRP051959_lymph_node | 12 .37 RPM |
| SRP051959_lung | 11 .83 RPM |
| SRP051959_liver | 88 .59 RPM |
| SRP051959_kidney | 14 .51 RPM |
| SRP051959_heart | 14 .73 RPM |
| SRP051959_colon | 25 .20 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Erinaceus europaeus | ENSEEUG00000013655 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000007372 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021273 | ortholog_one2one | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000006183 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1945 | 93.19 | 55.88 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2761 | 98.32 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000003988 retrocopies