Parental gene: | PHF6, ENSCJAG00000004238 |
| Aliases: | None |
| Description: | PHD finger protein 6 [Source:HGNC Symbol;Acc:18145] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | X:122275968..122332339(+) |
>ENSCJAG00000004238
ATGTCAAGCTCAGTTGAACAGAAAAAAGGGCCTACAAGACAGCGCAAATGTGGCTTTTGTAAGTCAAATAGAGACAAGGA
ATGTGGACAGTTACTAATATCTGAAAACCAGAAGGTGGCAGCGCACCATAAGTGTATGCTCTTTTCATCTGCTTTGGTAT
CATCACACTCTGATAATGAAAGTCTTGGTGGATTTTCTATTGAAGATGTCCAAAAGGAAATTAAAAGAGGCACGAAGCTG
ATGTGTTCTTTGTGCCATTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTCACAGGACATACCACTACCACTG
TGCATTGCATGATAAAGCTCAAATACGAGAGAAACCTTCACAAGGAATTTACATGGTCTATTGCCGAAAACACAAGAAAA
CTGCACATAACTCTGAAGCTGATTTAGAGGAAAGTTTTAATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAAG
AAAAGTCGCAAAGGAAGGCCAAGAAAAACTAATTTTAAAGGGCTGTCAGAAGATACCAGGTCCACGTCCTCCCATGGAAC
AGATGAAATGGAAAGTAGTTCCTATAGAGATAGGTCTCCACACAGAAGCAGCCCTAGTGACACCAGGCCTAAATGTGGAT
TTTGCCATGTTGGGGAGGAGGAAAATGAAGCACGAGGAAAGCTGCATATATTTAATGCCAAGAAGGCAGCTGCCCATTAT
AAGTGCATGTTGTTTTCTTCTGGCACAGTCCAGCTCACAACAACGTCAAGAGCAGAATTTGGAGACTTTGATATTAAAAC
TGTACTTCAGGAGATTAAGCGAGGAAAAAGAATGAAATGTACACTTTGCAGTCAGCCTGGTGCTACTATTGGATGTGAAA
TAAAAGCCTGTGTTAAGACTTACCATTACCACTGTGGAGTACAAGACAAAGCTAAATACATTGAAAATATGTCACGAGGA
ATTTACAAACTATACTGTAAAAATCATAGCGGAAATGATGAGAGAGATGAAGAAGATGAGGAACGAGAGAGTAAAAGCCG
AGGAAAAGTAGAAATTGATCAACAACTAACTCAGCAGCAACTTAATGGAAACTAG
ATGTCAAGCTCAGTTGAACAGAAAAAAGGGCCTACAAGACAGCGCAAATGTGGCTTTTGTAAGTCAAATAGAGACAAGGA
ATGTGGACAGTTACTAATATCTGAAAACCAGAAGGTGGCAGCGCACCATAAGTGTATGCTCTTTTCATCTGCTTTGGTAT
CATCACACTCTGATAATGAAAGTCTTGGTGGATTTTCTATTGAAGATGTCCAAAAGGAAATTAAAAGAGGCACGAAGCTG
ATGTGTTCTTTGTGCCATTGTCCTGGAGCAACAATTGGTTGTGATGTGAAAACATGTCACAGGACATACCACTACCACTG
TGCATTGCATGATAAAGCTCAAATACGAGAGAAACCTTCACAAGGAATTTACATGGTCTATTGCCGAAAACACAAGAAAA
CTGCACATAACTCTGAAGCTGATTTAGAGGAAAGTTTTAATGAACATGAACTGGAGCCCTCATCACCTAAAAGTAAAAAG
AAAAGTCGCAAAGGAAGGCCAAGAAAAACTAATTTTAAAGGGCTGTCAGAAGATACCAGGTCCACGTCCTCCCATGGAAC
AGATGAAATGGAAAGTAGTTCCTATAGAGATAGGTCTCCACACAGAAGCAGCCCTAGTGACACCAGGCCTAAATGTGGAT
TTTGCCATGTTGGGGAGGAGGAAAATGAAGCACGAGGAAAGCTGCATATATTTAATGCCAAGAAGGCAGCTGCCCATTAT
AAGTGCATGTTGTTTTCTTCTGGCACAGTCCAGCTCACAACAACGTCAAGAGCAGAATTTGGAGACTTTGATATTAAAAC
TGTACTTCAGGAGATTAAGCGAGGAAAAAGAATGAAATGTACACTTTGCAGTCAGCCTGGTGCTACTATTGGATGTGAAA
TAAAAGCCTGTGTTAAGACTTACCATTACCACTGTGGAGTACAAGACAAAGCTAAATACATTGAAAATATGTCACGAGGA
ATTTACAAACTATACTGTAAAAATCATAGCGGAAATGATGAGAGAGATGAAGAAGATGAGGAACGAGAGAGTAAAAGCCG
AGGAAAAGTAGAAATTGATCAACAACTAACTCAGCAGCAACTTAATGGAAACTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 22 .06 RPM |
| SRP051959_skeletal_muscle | 8 .89 RPM |
| SRP051959_lymph_node | 30 .52 RPM |
| SRP051959_lung | 21 .47 RPM |
| SRP051959_liver | 10 .09 RPM |
| SRP051959_kidney | 21 .25 RPM |
| SRP051959_heart | 13 .35 RPM |
| SRP051959_colon | 14 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008839 | within_species_paralog | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000007022 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3034 | 96.63 | 89.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000004238 retrocopies