Parental gene:

FUNDC2, ENSCJAG00000004287

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:141395668..141421373(+)


>ENSCJAG00000004287
ATGGAAACATCTGCCCCACGTGCCGGAAGCCGAGTGGTGGCGAAGACTGCGCGCCACTCCGCGGCCTACCGCGCAGATCC
TCTGCGTGTGTCCTCGCGAGACGAGCTCCTCGAAATGGCTGCACCCAGTCAAGGAAACTTTGAGGGAAATTTTGAGTCAC
TGGACCTTGCAGAATTTGCTAAGAAGCAGCCATGGTGGCGTAAACTATTCGGGCAGGAATCTGGACCTTCAGCTGAAAAG
TATAGCGTGGCAACTCAGCTGTTCATTGGAGGTGTCACTGGATGGTGCACGGGTTTCATATTCCAGAAGGTTGGAAAGTT
GGCTGCAACAGCTGTGGGAGGTGGATTTTTTCTCCTTCAGCTTGCAAACCATACTGGGTACATCAAAGTTGACTGGCAAC
GAGTGGAGAAATATGTCAGATATCCCAAAGAAGAGCCCAGAGCCCAGCTGGTTCTTCTTACCTTTCTTCCTTCTGTCTCT
CCTCAATCTGAAAGTTACGTGTCATTTGTGAAGAAGAATGTGATAGTGACTGGGGGATTTTTCGGAGGCTTTCACTTGGA
ATGGCATCCT

Library Parental gene expression (RPM)
SRP051959_spleen 4 .37 RPM
SRP051959_skeletal_muscle 10 .09 RPM
SRP051959_lymph_node 4 .63 RPM
SRP051959_lung 5 .34 RPM
SRP051959_liver 1 .73 RPM
SRP051959_kidney 5 .70 RPM
SRP051959_heart 8 .03 RPM
SRP051959_colon 2 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016977 ortholog_one2one 1 retrogene
retro_btau_292,
Choloepus hoffmanni ENSCHOG00000004306 ortholog_one2one 11 retrogenes
retro_chof_1501, retro_chof_161, retro_chof_1640, retro_chof_1674, retro_chof_2087, retro_chof_2351, retro_chof_2355, retro_chof_2396, retro_chof_2491, retro_chof_2519, retro_chof_580,
Callithrix jacchus ENSCJAG00000010876 within_species_paralog 1 retrogene
retro_cjac_896,
Dipodomys ordii ENSDORG00000013156 ortholog_one2one 1 retrogene
retro_dord_597,
Echinops telfairi ENSETEG00000013817 ortholog_one2one 2 retrogenes
retro_etel_1724, retro_etel_435,
Homo sapiens ENSG00000165775 ortholog_one2one 3 retrogenes
retro_hsap_2122, retro_hsap_2560, retro_hsap_3530,
Loxodonta africana ENSLAFG00000015289 ortholog_one2many 1 retrogene
retro_lafr_2,
Myotis lucifugus ENSMLUG00000007776 ortholog_one2many 1 retrogene
retro_mluc_219,
Macaca mulatta ENSMMUG00000010248 ortholog_one2many 1 retrogene
retro_mmul_78,
Monodelphis domestica ENSMODG00000016484 ortholog_one2one 1 retrogene
retro_mdom_1736,
Mus musculus ENSMUSG00000031198 ortholog_one2one 2 retrogenes
retro_mmus_2241, retro_mmus_2242,
Nomascus leucogenys ENSNLEG00000014443 ortholog_one2one 5 retrogenes
retro_nleu_1512, retro_nleu_1662, retro_nleu_1958, retro_nleu_2386, retro_nleu_494,
Otolemur garnettii ENSOGAG00000033461 ortholog_one2one 3 retrogenes
retro_ogar_1146, retro_ogar_132, retro_ogar_762,
Pongo abelii ENSPPYG00000020897 ortholog_one2many 4 retrogenes
retro_pabe_1884, retro_pabe_2646, retro_pabe_2916, retro_pabe_49,
Pan troglodytes ENSPTRG00000041852 ortholog_one2one 4 retrogenes
retro_ptro_1490, retro_ptro_1553, retro_ptro_2254, retro_ptro_2398,
Pteropus vampyrus ENSPVAG00000013552 ortholog_one2one 1 retrogene
retro_pvam_210,
Rattus norvegicus ENSRNOG00000024066 ortholog_one2one 2 retrogenes
retro_rnor_1648, retro_rnor_2870,
Sus scrofa ENSSSCG00000012817 ortholog_one2one 1 retrogene
retro_sscr_274,
Ictidomys tridecemlineatus ENSSTOG00000007801 ortholog_one2one 2 retrogenes
retro_itri_1157, retro_itri_1399,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_651 65.73 91.05
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2. retro_cjac_1977 85.42 75.79
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3. retro_cjac_2387 63.91 68.42
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Download FASTA sequences of all ENSCJAG00000004287 retrocopies