Parental gene:

DSE, ENSCJAG00000004530

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:116149382..116310990(+)


>ENSCJAG00000004530
ATGGGATCTTTCGAAGATGGTTTGGCTGCCTTGGAGATTTGGAGATCTGATGCCACGATGAGGACTCACACACGGGGGGC
TCCCAGTGTGTTTTTCATATATTTTCTTTGCTTTGTGTCAGCCTACATCACCGACGAGAACCCAGAAGTCATGATTCCCT
TCATCAATGCCAACTACGACAGCCACCCCATGTTGTACTTCTCCAGAGCAGAGGTGGCGGAGCTGCAGCTCAGGGCTGCC
AGCTCACACGAGCATATTGCGGCCCGTCTCACGGAGGCTGTGCACACGATGCTGTCCAGCCCCTTGGAATACCTTCCTCC
CTGGGATCCCAAGGACTACAGTGCCCGCTGGAATGAAATTTATGGAAACAACTTGGGTGCCTTAGCAATGTTCTGTGTGC
TGTATCCTGAGAACATTGAAGCCCGAGACATGGCCAAAGACTACATGGAGAGGATGGCAGCGCAGCCTAGTTGGTTGGTG
AAAGATGCTCCTTGGGATGAGGTCCCGCTAGCTCACTCCCTGGTTGGCTTCGCCACTGCTTATGACTTCTTGTACAACTA
CCTGAGCAAGACACAACAGGAGAAGTTTCTTGAAGTGATTGCCAATGCCTCAGGATATATGTATGAAACTTCATACAGGA
GAGGATGGGGATTTCAATACCTGCACAATCATCAGCCCACCAACTGCATGGCTTTGCTCACAGGAAGCCTAGTCCTGATG
AATCAAGGATATCTTCAAGAAGCCTACTTGTGGACCAAACAAGTTCTGACCATCATGGAGAAATCTCTGGTCTTGCTCAG
GGAGGTGATGGATGGCTCCCTCTATGAAGGAGTTGCTTATGGCACCTACACCACTAGATCACTCTTCCAATACATGTTTC
TTGTCCAGAGGCACTTCGACATCAACCACTTTGGCCATCCGTGGCTTAAGCAGCACTTTGCATTTATGTATAGAACCATC
CTGCCAGGGTTTCAAAGGACTGTGGCTATTGCAGACTCAAATTACAACTGGTTTTATGGTCCAGAAAGCCAGTTAGTGTT
CCTTGATAAATTTGTCATGCGTAACGGCAGTGGTAACTGGCTAGCTGACCAAATCAGAAGGAACCGTGTGGTGGAAGGTC
CGGGAACACCATCCAAAGGGCAGCGCTGGTGCACTCTGCACACGGAATTTCTCTGGTATGATGCCAGCTTGAAATCGGTT
CCCCCTCCGGACTTTGGCACCCCTACACTGCATTATTTTGAAGACTGGGGTGTCGTGACTTATGGAAGTGCACTACCTGC
AGAAATCAATAGATCTTTCCTTTCCTTCAAGTCTGGAAAATTGGGGGGACGTGCAATATATGACATTGTCCACAGAAACA
AATACAAAGATTGGATCAAAGGATGGAGAAATTTTAATGCAGGACATGAACATCCTGATCAAAACTCATTTACTTTTGCT
CCCAATGGTGTACCTTTCATTACTGAGGCTCTGTATGGGCCAAAGTATACCTTCTTCAACAATGTTTTGATGTTTTCCCC
AGCTGTGTCAAAGAGCTGCTTTTCTCCTTGGGAGGGTCAGGTCACAGAAGACTGCTCATCAAAATGGTCTAAATACAAGC
ACGACCTGGCAGCTAGTTGTCAGGGGAGAGTAGTTGCAGCAGAGGAGAAAAATGGGGTGGTTTTCATCCGAGGAGAAGGT
GTGGGAGCTTATAACCCCCATCTCAATCTGAAGAATGTTCAGAGGAATCTCATCCTCCTACATCCACAGCTGCTTCTCCT
TGTAGACCAAATACACCTGGGAGAGGAGAGTCCTCTGGAGATAGCAGCAAGCTTCTTCCACAATGTGGATGTTCCTTTTG
AGGAGACTATGGTAGATGGTGTCCATGGGGCTTTCATCAGGCAGAGAGACGGTCTCTATAAAATGTACTGGATGGATGAT
ACTGGCTACAGTGAGAAAGCAACCTTTGCCTCAGTGACCTATCCTAGGGGCTATCCCTACAATGGGACAAACTATGTGAA
TGTCACCATGCACCTCCGAAGTCCCATCACTAGGGCAGCTTACCTCTTCATAGGGCCATCTATAGATGTTCAGAGCTTCA
CCATCCACGGGGACTCTCAGCAACTGGATGTGTTCGTAGCCACCAGTGAACATGCCTACACAACATACCTGTGGACAGAT
GAGGCCACAGGACAGTCTGCCTTTGCTCAGGTCATTGCTGATCATCACAAAATTCTGTTTGACCAGAATTCAGCCATCAA
GACCAGCATTGTCCCTGAGGTGAAGGACTATGCTGCTATTGTGGAACAGAACCTGCAGCATTTTAAGCCAGTGTTTCAGC
TGCTGGAGAAGCAGATACTGTCCCGAGTCCGGAACACAGCTAGCTTTCGGAAGACTGCTGAGCGCCTGCTGAGATTTTCA
GATAAGAGACAGACTGAGGAGGCCATTGACAGGATTTTTGCCATATCACAGAAACAGCAGCAGCAAAGCAAGTCAAAGAA
AAACCGAAGGGCAGGCAAACGCTATAAATTTGTGGATGCTGTCCCTGATATTTTTGCACAGATTGAAGTCAATGAGAAAA
AGATTAGACAGAAAGCTCAGATTTTGGCAGAGAAAGAACTACCCATAGATGAAGATGAAGAAATGAAAGACCTTTTAGAT
TTTGCAGATGTAACATATGAGAAACATAAAAATGGAGGCTTGATGAAAGGCCGGTTTGGAGAGGCAAGGATGGTGACGAC
TACTCACAGCAGGGCCCCATCACTGTCTGCTTCCTATACCAGGTTGTTCCTGATCCTGAACATTGCTATTTTCTTTGTCA
TGTTGGCGATGCAACTGACTTATTTCCAGAGGGCCCAGAGCCTACATGGCCAAAGATGTCTTTATGCAGTTCTTCTAATA
GATAGCTGTATTTTATTGTGGTTGTACTCTTCTTGTTCCCAATCACAGTGTTAG

Library Parental gene expression (RPM)
SRP051959_spleen 13 .72 RPM
SRP051959_skeletal_muscle 4 .56 RPM
SRP051959_lymph_node 5 .34 RPM
SRP051959_lung 8 .39 RPM
SRP051959_liver 4 .46 RPM
SRP051959_kidney 4 .95 RPM
SRP051959_heart 9 .82 RPM
SRP051959_colon 5 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013791 ortholog_one2one 1 retrogene
retro_acar_15,
Homo sapiens ENSG00000111817 ortholog_one2one 1 retrogene
retro_hsap_4178,
Gorilla gorilla ENSGGOG00000026746 ortholog_one2one 2 retrogenes
retro_ggor_1419, retro_ggor_2802,
Nomascus leucogenys ENSNLEG00000013106 ortholog_one2one 1 retrogene
retro_nleu_2476,
Pongo abelii ENSPPYG00000016948 ortholog_one2one 2 retrogenes
retro_pabe_3418, retro_pabe_3517,
Pan troglodytes ENSPTRG00000018529 ortholog_one2one 1 retrogene
retro_ptro_2833,
Sorex araneus ENSSARG00000010799 ortholog_one2one 1 retrogene
retro_sara_560,
Takifugu rubripes ENSTRUG00000006239 ortholog_one2one 1 retrogene
retro_trub_32,
Xenopus tropicalis ENSXETG00000032776 ortholog_one2one 1 retrogene
retro_xtro_8,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1174 53.61 57.72
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Download FASTA sequences of all ENSCJAG00000004530 retrocopies