Parental gene:

GTF3C6, ENSCJAG00000005248

Aliases:None
Description:general transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:HGNC Symbol;Acc:20872]
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:110611371..110619685(+)


>ENSCJAG00000005248
ATGGCGGCTGTCGACCAGCGGAGTCTGGAGGACGAAGAGGAGGAGGAGCAGGAGCAGTTGGTTCTGGTGGAGTTATCAGG
AATCATTGATTCGGACTTTCTTTCAAAATGTGAAAACAAATGTAAGATTTTGGGCATTGACACTGAGAGGCCCATTTTGC
AAGTGGACAGTTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTTGAACAT
GCTGATACAGAAGGCAGTAATAAAACAGTGCTAAAATATAAATGCCATACCATGAAGAAGCTCAGCATGACAAGAACTCT
TCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTACC
GACCCAACATGATCTGTAGCTTTCTACATGAGAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAACCTTTGGAA
TTGGAAGAGGAAGAGATTCAAATGAAAGACAGTTCAAACCTGAGTTGTGAGCAGGAGAAACCACTGCACTTGGAAATAGA
AGATTCTGGTACTCTTATTGATATACCTTCTGAGACAGAAGGTTCTATTTTTATGGAAACTCAAATCCTGCCTTAG

Library Parental gene expression (RPM)
SRP051959_colon 5 .06 RPM
SRP051959_heart 3 .14 RPM
SRP051959_kidney 6 .63 RPM
SRP051959_liver 2 .95 RPM
SRP051959_lung 2 .88 RPM
SRP051959_lymph_node 3 .81 RPM
SRP051959_skeletal_muscle 3 .93 RPM
SRP051959_spleen 3 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003535 ortholog_one2one 1 retrogene
retro_amel_370,
Dasypus novemcinctus ENSDNOG00000014270 ortholog_one2one 4 retrogenes
retro_dnov_1228, retro_dnov_1654, retro_dnov_377, retro_dnov_931,
Homo sapiens ENSG00000155115 ortholog_one2one 3 retrogenes
retro_hsap_3714, retro_hsap_4728, retro_hsap_4735,
Gorilla gorilla ENSGGOG00000010681 ortholog_one2one 1 retrogene
retro_ggor_2511,
Myotis lucifugus ENSMLUG00000013919 ortholog_one2one 1 retrogene
retro_mluc_897,
Macaca mulatta ENSMMUG00000012709 ortholog_one2one 3 retrogenes
retro_mmul_1700, retro_mmul_2520, retro_mmul_2524,
Monodelphis domestica ENSMODG00000017924 ortholog_one2one 1 retrogene
retro_mdom_876,
Mustela putorius furo ENSMPUG00000010179 ortholog_one2many 1 retrogene
retro_mputfur_182,
Nomascus leucogenys ENSNLEG00000012846 ortholog_one2one 3 retrogenes
retro_nleu_1237, retro_nleu_2122, retro_nleu_2552,
Pan troglodytes ENSPTRG00000018502 ortholog_one2one 3 retrogenes
retro_ptro_2516, retro_ptro_3145, retro_ptro_3149,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3118 66.67 98.58
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2. retro_cjac_4098 72.29 77.25
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Download FASTA sequences of all ENSCJAG00000005248 retrocopies