Parental gene: | GTF3C6, ENSCJAG00000005248 |
| Aliases: | None |
| Description: | general transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:HGNC Symbol;Acc:20872] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 4:110611371..110619685(+) |
>ENSCJAG00000005248
ATGGCGGCTGTCGACCAGCGGAGTCTGGAGGACGAAGAGGAGGAGGAGCAGGAGCAGTTGGTTCTGGTGGAGTTATCAGG
AATCATTGATTCGGACTTTCTTTCAAAATGTGAAAACAAATGTAAGATTTTGGGCATTGACACTGAGAGGCCCATTTTGC
AAGTGGACAGTTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTTGAACAT
GCTGATACAGAAGGCAGTAATAAAACAGTGCTAAAATATAAATGCCATACCATGAAGAAGCTCAGCATGACAAGAACTCT
TCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTACC
GACCCAACATGATCTGTAGCTTTCTACATGAGAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAACCTTTGGAA
TTGGAAGAGGAAGAGATTCAAATGAAAGACAGTTCAAACCTGAGTTGTGAGCAGGAGAAACCACTGCACTTGGAAATAGA
AGATTCTGGTACTCTTATTGATATACCTTCTGAGACAGAAGGTTCTATTTTTATGGAAACTCAAATCCTGCCTTAG
ATGGCGGCTGTCGACCAGCGGAGTCTGGAGGACGAAGAGGAGGAGGAGCAGGAGCAGTTGGTTCTGGTGGAGTTATCAGG
AATCATTGATTCGGACTTTCTTTCAAAATGTGAAAACAAATGTAAGATTTTGGGCATTGACACTGAGAGGCCCATTTTGC
AAGTGGACAGTTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTTGAACAT
GCTGATACAGAAGGCAGTAATAAAACAGTGCTAAAATATAAATGCCATACCATGAAGAAGCTCAGCATGACAAGAACTCT
TCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCTCCTACC
GACCCAACATGATCTGTAGCTTTCTACATGAGAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAACCTTTGGAA
TTGGAAGAGGAAGAGATTCAAATGAAAGACAGTTCAAACCTGAGTTGTGAGCAGGAGAAACCACTGCACTTGGAAATAGA
AGATTCTGGTACTCTTATTGATATACCTTCTGAGACAGAAGGTTCTATTTTTATGGAAACTCAAATCCTGCCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 3 .55 RPM |
| SRP051959_skeletal_muscle | 3 .93 RPM |
| SRP051959_lymph_node | 3 .81 RPM |
| SRP051959_lung | 2 .88 RPM |
| SRP051959_liver | 2 .95 RPM |
| SRP051959_kidney | 6 .63 RPM |
| SRP051959_heart | 3 .14 RPM |
| SRP051959_colon | 5 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003535 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000014270 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000155115 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010681 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013919 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012709 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000017924 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010179 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012846 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000018502 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3118 | 66.67 | 98.58 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4098 | 72.29 | 77.25 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000005248 retrocopies