Parental gene: | GTF3C6, ENSPTRG00000018502 |
| Aliases: | None |
| Description: | General transcription factor IIIC, polypeptide 6, alpha 35kDa [Source:UniProtKB/TrEMBL;Acc:K7B6B2] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 6:112036637..112045922(+) |
>ENSPTRG00000018502
ATGGCGGCGGCGGCGGACGAGCGGAGTCCAGAGGACGGAGAAGACGAGGAAGAGGAGGAGCAGTTGGTTCTGGTGGAATT
ATCAGGAATTATTGATTCAGACTTCCTCTCAAAATGTGAAAATAAATGCAAGGTTTTGGGCATTGACACTGAGAGGCCCA
TTCTGCAAGTGGACAGCTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTT
GAACATGCTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGCCATACAATGAAGAAGCTCAGCATGACAAG
AACTCTCCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCT
CCTATCGACCCAACATGATTTGTAACTTTCTACATGAAAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAATCT
TTGGAATTGGAAGAGGAAGAGATTCAAATGAACGACAGTTCAAACCTGAGTTGTGAACAGGAGAAACCAATGCACTTGGA
AATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAGACAGAAGGTTCTGTTTTTATGACTCAAATGCTGCCTTAG
ATGGCGGCGGCGGCGGACGAGCGGAGTCCAGAGGACGGAGAAGACGAGGAAGAGGAGGAGCAGTTGGTTCTGGTGGAATT
ATCAGGAATTATTGATTCAGACTTCCTCTCAAAATGTGAAAATAAATGCAAGGTTTTGGGCATTGACACTGAGAGGCCCA
TTCTGCAAGTGGACAGCTGTGTCTTTGCTGGGGAGTATGAAGACACTCTTGGGACCTGTGTTATATTTGAAGAAAATGTT
GAACATGCTGATACAGAAGGCAATAATAAAACAGTGCTAAAATATAAATGCCATACAATGAAGAAGCTCAGCATGACAAG
AACTCTCCTGACAGAGAAGAAGGAAGGAGAAGAAAACATAGGTGGGGTGGAATGGCTGCAAATAAAGGATAATGATTTCT
CCTATCGACCCAACATGATTTGTAACTTTCTACATGAAAATGAAGACGAAGAAGTGGTAGCTTCAGCCCCAGATAAATCT
TTGGAATTGGAAGAGGAAGAGATTCAAATGAACGACAGTTCAAACCTGAGTTGTGAACAGGAGAAACCAATGCACTTGGA
AATAGAAGATTCTGGTCCTCTTATTGATATACCTTCTGAGACAGAAGGTTCTGTTTTTATGACTCAAATGCTGCCTTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 12 .96 RPM |
| SRP007412_cerebellum | 14 .55 RPM |
| SRP007412_heart | 40 .43 RPM |
| SRP007412_kidney | 35 .49 RPM |
| SRP007412_liver | 22 .85 RPM |
| SRP007412_testis | 44 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003535 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005248 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000014270 | ortholog_one2one | 4 retrogenes | |
| Homo sapiens | ENSG00000155115 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010681 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013919 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000012709 | ortholog_one2one | 3 retrogenes | |
| Monodelphis domestica | ENSMODG00000017924 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000010179 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000012846 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_2516 | 70.73 | 76.42 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_3145 | 69.14 | 75.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_3149 | 91.46 | 93.40 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000018502 retrocopies