Parental gene:

ENSCJAG00000005359

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:16:74406641..74479524(+)


>ENSCJAG00000005359
ATGTCGAGTTTCTCCAGGACGCCCCAGCAATGGGCCACTTTTGCTAGAGTATGGTATCTCTTAGATGGGAAAATGCAGCC
ACCTGGCAAACTTGCCTCTATGGCATCAATAAGACTTCAGGGATTACATAAACCTGTGTACCATGAACTGAGTGACTGTG
GGGATCATGTTGTTATAATGAACACAAGACACATTGCATTTTCTGGAAACAAATGGGAACAAAAAGTATACTCCTCCCAC
ACTGGCTACCCAGGTGGATTTAGACAAGTAACAGCTGCTCAGCTTCACCTGAAGGATCCAGTGGCAATTGTAAAACTAGC
TATTTATGGCATGCTACCAAAAAACCTTCACAGAAGAACAATGATGCAAAGGTTGCATCTTTTCCCAGATGAGGATATTC
CAGAAGATATTCTTAAGAATTTAGTGGAAGAGCTTCCACAACCACGAAAAATACCTAAACGTCTGGATGAGTACACACAA
GAAGAAATAGACGCTTTCCCAAGATTGTGGACTCCACCTGAAGATTTTCGGCTATAA

Library Parental gene expression (RPM)
SRP051959_spleen 4 .12 RPM
SRP051959_skeletal_muscle 5 .74 RPM
SRP051959_lymph_node 3 .81 RPM
SRP051959_lung 4 .41 RPM
SRP051959_liver 6 .89 RPM
SRP051959_kidney 6 .19 RPM
SRP051959_heart 4 .68 RPM
SRP051959_colon 4 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006926 ortholog_one2many 1 retrogene
retro_chof_648,
Dipodomys ordii ENSDORG00000016654 ortholog_one2many 1 retrogene
retro_dord_480,
Equus caballus ENSECAG00000021161 ortholog_one2many 1 retrogene
retro_ecab_952,
Mustela putorius furo ENSMPUG00000001080 ortholog_one2many 2 retrogenes
retro_mputfur_1585, retro_mputfur_623,
Oryctolagus cuniculus ENSOCUG00000016189 ortholog_one2many 1 retrogene
retro_ocun_675,
Ochotona princeps ENSOPRG00000015721 ortholog_one2many 2 retrogenes
retro_opri_274, retro_opri_454,
Pteropus vampyrus ENSPVAG00000003719 ortholog_one2many 1 retrogene
retro_pvam_627,
Rattus norvegicus ENSRNOG00000004401 ortholog_one2many 1 retrogene
retro_rnor_2720,
Sus scrofa ENSSSCG00000005996 ortholog_one2many 1 retrogene
retro_sscr_1183,
Tupaia belangeri ENSTBEG00000004571 ortholog_one2many 5 retrogenes
retro_tbel_1026, retro_tbel_1596, retro_tbel_2517, retro_tbel_3095, retro_tbel_456,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_162 99.44 100.00
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Download FASTA sequences of all ENSCJAG00000005359 retrocopies