RetrogeneDB ID: | retro_mputfur_623 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896927.1:14573160..14573677(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL13 | ||
Ensembl ID: | ENSMPUG00000001080 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L13 [Source:HGNC Symbol;Acc:14278] |
Percent Identity: | 77.59 % |
Parental protein coverage: | 96.65 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SFSKAPQQWATFARVWYLLDGKMQPPGKLAAVASIKLQGLH-KPIYHQLSDCGDHVVIMNTRHIAFSGNK |
SFSKA.QQWATFA...YLL.GKMQPPGKLA..AS.KLQGL..KP.YHQLSD..D.VVIM.TRHIAF.GNK | |
Retrocopy | SFSKALQQWATFAQA*YLLGGKMQPPGKLAVRASDKLQGLD>KPFYHQLSDYADCVVIMGTRHIAFPGNK |
Parental | WEQKVYSSHTGYPGGFKQVTAAQLHQKDPIAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIPEDIRKNL |
WEQKV.S.HTGYPGGFK.VTAA.LH.KD..A..KLAIYGML.KNLH.RT.MQRLHLFPDEDI..DIRK.L | |
Retrocopy | WEQKV*STHTGYPGGFK*VTAAELHEKDLVANAKLAIYGMLLKNLH-RTTMQRLHLFPDEDIRGDIRKYL |
Parental | VEELPQPRKVPRRLDEYTQEEIEAFPRLWSPPLD |
VEELP.PRK.P..LD.YTQEEIEAFPR.WS.P.D | |
Retrocopy | VEELPHPRK*PTCLDKYTQEEIEAFPRVWSQPED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005359 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016654 | 1 retrocopy | |
Equus caballus | ENSECAG00000021161 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001080 | 2 retrocopies |
retro_mputfur_1585, retro_mputfur_623 ,
|
Oryctolagus cuniculus | ENSOCUG00000016189 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015721 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003719 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004401 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005996 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004571 | 5 retrocopies |