Parental gene:

CCT3, ENSCJAG00000005776

Aliases:None
Description:chaperonin containing TCP1, subunit 3 (gamma) [Source:HGNC Symbol;Acc:1616]
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:10351910..10375850(-)


>ENSCJAG00000005776
GAGGCAGCGTTTTTTGGGCTTCTGTCTGGTTCTCTCTCTCCAGAAGGTTCTGTCGGTTCCCCCAGTTCTGGGTACCCGGC
TCTGCATCGCGCCGCCATGATGGGCCATCGTCCCGTGCTCGTGCTCAGCCAGAACACAAAGCGTGAATCCGGAAGAAAAG
TTCAATCTGGAAACATCAATGCTGCCAAGACTATTGCAGATATCATCCGAACATGTTTGGGACCCAAGTCCATGATGAAG
ATGCTATTGGACCCAATGGGAGGCATCGTGATGACCAATGATGGCAACGCCATTCTTCGAGAGATTCAGGTCCAGCATCC
AGCAGCCAAGTCCATGATTGAAATTAGCCGGACCCAGGATGAAGAGGTTGGAGATGGGACCACATCAGTAATTATTCTTG
CGGGGGAAATGCTGTCTGTAGCTGAGCACTTCCTGGAGCAGCAGATGCACCCAACAGTGGTGATCAGTGCTTACCGCAAG
GCATTGGATGATATGATCAGCACCCTAAGGAAAATCAGTATCCCAGTTGACATCAATAACAGTGATATGATGCTGAACAT
CATCAATAGCTCCATAACTACCAAAGCCATCAGTCGGTGGTCATCTTTGGCTTGCAACATTGCCCTGGATGCTGTCAAGA
CAGTACAGTTTGAGGAGAATGGTCGGAAAGAGATTGACATAAAAAAATATGCAAAGGTGGAAAAGATACCTGGGGGCATC
ATTGAAGACTCCTGTGTCTTGCGTGGAGTCATGATTAACAAGGATGTGACCCATCCACGCATGCGGCGCTATATCAAGAA
CCCTCGCATTGTGCTGCTGGATTCTTCTCTGGAATACAAGAAAGGAGAAAGCCAGACTGACATTGAGATTACACGAGAGG
AGGACTTCACACGAATTCTCCAAATGGAAGAAGAGTATATCCAGCAGCTCTGTGAAGACATTATCCAGCTGAAGCCTGAT
GTGGTCATCACCGAAAAGGGCATCTCAGATTTAGCTCAGCACTACCTCATGCGGGCCAATATCACAGCCATCCGCAGAGT
CCGGAAGACAGACAATAATCGCATTGCTAGAGCCTGTGGGGCCCGGATAGTCAGCCGACCAGAGGAACTGAGAGAAGATG
ATGTTGGAACGGGAGCAGGCCTGTTGGAAATCAAGAAAATTGGCGATGAATACTTTACATTCATCACTGAGTGCAAAGAC
CCCAAGGCCTGCACCATTCTTCTCCGGGGGGCTAGCAAAGAGATTCTTGCGGAAGTAGAACGCAATCTCCAGGATGCCAT
GCAAGTGTGCCGCAATGTTCTCCTGGACCCTCAGCTGGTGCCAGGGGGTGGGGCCTCTGAGATGGCTGTGGCCCATGCCT
TGACAGAAAAATCCAAGGCCATGACTGGTGTGGAACAATGGCCATACAGGGCTGTTGCACAGGCCCTAGAGGTCATCCCT
CGTACCCTGATCCAGAACTGTGGGGCCAGCACCATCCGTCTACTTACCTCCCTTAGGGCCAAGCACACCCAGGAGAACTG
TGAGACCTGGGGTGTAAATGGTGAGACGGGTACTTTGGTGGACATGAAGGAACTGGGCATATGGGAGCCATTGGCTGTGA
AGCTGCAGACTTATAAGACAGCAGTGGAGACGGCAGTTCTGCTACTGCGAATTGATGACATTGTCTCAGGCCACAAAAAG
AAAGGCGATGACCAGAGCCGGCAAGGCGGGGCTCCTGATGCTGGCCAGGAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 37 .48 RPM
SRP051959_skeletal_muscle 38 .28 RPM
SRP051959_lymph_node 50 .64 RPM
SRP051959_lung 34 .99 RPM
SRP051959_liver 43 .56 RPM
SRP051959_kidney 33 .04 RPM
SRP051959_heart 28 .24 RPM
SRP051959_colon 31 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000009131 ortholog_one2one 1 retrogene
Mus musculus ENSMUSG00000001416 ortholog_one2one 2 retrogenes
Otolemur garnettii ENSOGAG00000008967 ortholog_one2one 1 retrogene
Rattus norvegicus ENSRNOG00000019090 ortholog_one2many 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000001798 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1243 99.12 98.27
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Download FASTA sequences of all ENSCJAG00000005776 retrocopies