Parental gene:

ENSCJAG00000005913

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:18:13804624..13849529(-)


>ENSCJAG00000005913
ATGTCCAGCAAAGGGAGCAGCACAGATGGCAGAACAGACTTAGCTAATGGAAGCCTGTCTAGCAGTCCAGAGGAGATGTC
TGGAACTGAAGAGGGGAGGGAGACATCCTCAGGCATTGAAGTGGAGGCCTCAGACCTGAGTTTGAGTTTGACTGGGGATG
ATGGTGGCCCCAACCGCACCAGCACAGAAAGTCGAGGCACAGACACAGAGAGCTCAGGTGAAGATAAGGACTCTGACAGC
ATGGAGGACACTGGTCATTACTCCATTAATGAAGAAAATCGAGTCCATGACCGCTCAGAGGAAGAGGAAGAGGAGGAAGA
GGAAGAAGAAGAGCAGCCTCGGCGCCGTGTACAGCGCAAGCGGGCTAACCGTGACCAGGACTCATCAGATGATGAGCGGG
CTCTAGAGGACTGGGTGTCCTCAGAAACATCAGCTCTACCCCGACCTCGCTGGCAAGCCCTCCCTGCCCTTCGGGAGCGG
GAGCTGGGTTCAAGTGCCCGCTTTGTCTACGAGGCCTGTGGGGCAAGAGTCTTTGTGCAGCGTTTCCGCCTGCAGCATGG
GCTTGAGGGCCATACTGGTTGTGTCAATACCCTGCACTTTAACCAGCGCGGCACCTGGCTGGCCAGTGGCAGCGATGACC
TGAAGGTGGTGGTGTGGGATTGGGTGCGGCGGCAGCCAGTACTGGACTTTGAGAGTGGCCACAAAAGTAATGTGTTCCAG
GCCAAGTTTCTTCCTAATAGTGGTGATTCCACTCTGGCCATGTGTGCCCGTGACGGGCAGGTTCGGGTAGCAGAACTGTC
TGCCACACAGTGTTGCAAGAATACAAAACGTGTGGCCCAGCACAAGGGAGCGTCTCACAAGTTGGCTCTGGAACCAGATT
CTCCCTGTACGTTCTTATCTGCAGGTGAAGATGCAGTTGTTTTCACCATTGACCTGAGACAAGACCGCCCAGCTTCGAAA
CTGGTGGTGACAAAAGAGAAAGAGAAGAAAGTGGGGCTGTATACAATCTATGTGAATCCTGCCAATACCCACCAGTTTGC
AGTCGGCGGACGAGATCAGTTTGTAAGGATTTATGACCAGAGGAAAATTGATGAGAATGAGAACAATGGAGTACTCAAGA
AGTTCTGCCCTCATCACCTGGTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGAG
CTCCTGGCCAGTTACAATGATGAAGACATTTACCTCTTCAACTCCTCTCACAGTGATGGGGCCCAGTATGTTAAGAGATA
TAAGGGCCACAGAAATAATGCCACAGTAAAAGGCGTCAATTTCTATGGCCCCAAGAGTGAGTTTGTGGTGAGCGGTAGTG
ACTGTGGGCACATCTTTCTCTGGGAGAAATCATCCTGCCAGATTATTCAGTTCATGGAGGGGGACAAGGGAGGCGTGGTA
AACTGTCTTGAGCCCCACCCTCACCTGCCTGTGTTGGCAACCAGTGGCCTAGACCATGATGTGAAGATATGGGCACCCAC
AGCTGAAGCTTCCACTGAGCTGACAGGGTTAAAAGATGTGATTAAGAAGAACAAGCGGGATCGGGATGAAGAGAGCTTGC
ACCACACTGACCTGTTTGATAGTCACATGCTGTGGTTCCTCATGCATCACCTGAGACAGAGACGCCACCACCGGCGCTGG
CGAGAACCTGGGGTTGGGGCCACAGACGCAGACTCTGATGAGTCTCCCAGCTCCTCAGACACATCGGACGAGGAGGAGGG
CCCTGACCGAGTGCAGTGCATGCCATCTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 41 .87 RPM
SRP051959_skeletal_muscle 84 .19 RPM
SRP051959_lymph_node 36 .73 RPM
SRP051959_lung 45 .57 RPM
SRP051959_liver 51 .21 RPM
SRP051959_kidney 59 .30 RPM
SRP051959_heart 52 .59 RPM
SRP051959_colon 24 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014293 ortholog_one2one 1 retrogene
retro_amel_47,
Bos taurus ENSBTAG00000005796 ortholog_one2one 1 retrogene
retro_btau_1853,
Canis familiaris ENSCAFG00000031010 ortholog_one2one 1 retrogene
retro_cfam_223,
Echinops telfairi ENSETEG00000012876 ortholog_one2one 1 retrogene
retro_etel_654,
Felis catus ENSFCAG00000003925 ortholog_one2one 1 retrogene
retro_fcat_14,
Mustela putorius furo ENSMPUG00000013949 ortholog_one2one 1 retrogene
retro_mputfur_173,
Mus musculus ENSMUSG00000026554 possible_ortholog 1 retrogene
retro_mmus_111,
Otolemur garnettii ENSOGAG00000011349 ortholog_one2one 1 retrogene
retro_ogar_2113,
Pteropus vampyrus ENSPVAG00000007982 ortholog_one2one 1 retrogene
retro_pvam_1356,
Sus scrofa ENSSSCG00000006388 ortholog_one2one 1 retrogene
retro_sscr_88,
Tupaia belangeri ENSTBEG00000001566 ortholog_one2one 1 retrogene
retro_tbel_3644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1322 85.97 63.76
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Download FASTA sequences of all ENSCJAG00000005913 retrocopies