Parental gene:

ENSSSCG00000006388

Aliases:None
Description:Sus scrofa DDB1 and CUL4 associated factor 8 (DCAF8), mRNA. [Source:RefSeq mRNA;Acc:NM_001244434]
Organism:Pig (Sus scrofa)
Coordinates:4:98104426..98150947(+)


>ENSSSCG00000006388
ATGTCCAGCAAAGGGAGCAGCACAGATGGCAAAACAGACTTAGCTAATGGAAGCCTGTCTAGCAGTCCAGAGGAGATGTC
TGGTGCTGAGGAAGGGAGAGAGACATCCTCAGGCATTGAAGTGGAGGCCTCAGACCTGAGCTTGAGCTTGACTGGGGATG
ATGGTGGCCCCAATCGCACCAGCACAGAAAGTCGAGGCACGGATACAGAGAGCTCAGGTGAAGACAAGGACTCTGACAGC
ATGGAGGACACTGGCCATTACTCCATCAATGATGAAAACCAAGTCCATGACCCCTCAGAGGAAGAGGAGGAGGAAGAAGA
GGAGGAAGAAGAGCATCCTCGTCGCCGTGTACAGCGCAAGCGGGCCAATCGTGATCAGGACTCATCCGACGATGAGCGAG
CCCTGGAGGACTGGGTAGCCTCAGAGACATCAGCCCTGCCCCGACCTCGCTGGCAAGCCCTTCCTGCTCTTCGGGAGCGG
GAGCTGGGTTCAAGTGCCCGTTTTGTGTATGAGGCTTGTGGGGCAAGAGTCTTTGTGCAGCGTTTCCGTCTGCAGCATGG
GCTTGAGGGCCATACTGGTTGTGTTAATACCCTGCACTTTAACCAGCGCGGCACCTGGCTGGCCAGTGGCAGCGATGACC
TGAAAGTGGTGGTTTGGGACTGGGTGCGGCGACAGCCAGTATTGGACTTTGAGAGTGGCCACAAAAGCAATGTCTTCCAG
GCCAAGTTCCTTCCTAACAGTGGTGATTCTACCCTGGCCATGTGTGCCCGTGATGGGCAGGTTCGGGTAGCAGAGTTGTC
TGCTACACAGTGCTGCAAGAATACGAAGCGTGTGGCACAGCACAAGGGAGCATCCCACAAATTGGCCCTGGAACCAGACT
CTCCCTGTACGTTCCTGTCTGCAGGTGAAGATGCAGTTGTCTTTACCATTGACCTTAGACAAGACCGGCCAGCTTCGAAA
TTGGTGGTGACAAAAGAAAAGGAGAAGAAAGTGGGGCTGTATACAATCTATGTGAATCCCGCCAATACACATCAGTTTGC
AGTGGGTGGACGAGATCAGTTTGTAAGGATTTATGACCAGAGGAAAATTGATGAGAATGAAAACAATGGAGTACTCAAGA
AATTCTGTCCTCATCACCTGGTGAACAGTGAGTCCAAAGCAAACATCACCTGTCTTGTGTACAGCCACGACGGCACAGAG
CTCCTGGCCAGTTACAACGATGAAGACATTTACCTCTTCAACTCCTCTCACAGTGATGGGGCCCAGTATATTAAAAGATA
CAAGGGCCACAGAAATAACGCCACAGTAAAAGGCGTCAATTTCTATGGCCCCAAGAGTGAGTTTGTGGTGAGCGGTAGTG
ACTGCGGGCACATCTTCCTCTGGGAGAAATCATCCTGCCAGATCATTCAGTTCATGGAGGGGGACAAGGGAGGCGTGGTA
AATTGTCTTGAGCCCCATCCTCACCTGCCTGTGCTGGCAACCAGTGGCCTAGACCATGATGTCAAGATCTGGGCACCCAC
AGCCGAAACTTCCACTGAGCTTACAGGGTTAAAGGATGTGATTAAGAAGAACAAGCGGGAACGGGATGAAGATAGCTTAC
ACCACACTGACTTATTTGATAGCCACATGCTCTGGTTCCTCATGCATCACCTGAGACAGAGACGCCATCACCGGCGCTGG
CGAGAACCTGGGGTTGGGGCCACAGACGCAGATTCGGATGAGTCTCCCAGCTCCTCAGACACATCGGACGAGGAGGAGGG
CCCCGACCGGGTGCAGTGTATGCCATCCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 39 .69 RPM
SRP014902_testis 122 .63 RPM
SRP018288_heart 105 .69 RPM
SRP018288_kidney 143 .62 RPM
SRP018288_liver 71 .96 RPM
SRP018288_lung 108 .65 RPM
SRP018856_adipose 130 .19 RPM
SRP035408_brain 56 .95 RPM
SRP035408_liver 60 .47 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014293 ortholog_one2one 1 retrogene
retro_amel_47,
Bos taurus ENSBTAG00000005796 ortholog_one2one 1 retrogene
retro_btau_1853,
Canis familiaris ENSCAFG00000031010 ortholog_one2one 1 retrogene
retro_cfam_223,
Callithrix jacchus ENSCJAG00000005913 ortholog_one2one 1 retrogene
retro_cjac_1322,
Echinops telfairi ENSETEG00000012876 ortholog_one2one 1 retrogene
retro_etel_654,
Felis catus ENSFCAG00000003925 ortholog_one2one 1 retrogene
retro_fcat_14,
Mustela putorius furo ENSMPUG00000013949 ortholog_one2one 1 retrogene
retro_mputfur_173,
Mus musculus ENSMUSG00000026554 possible_ortholog 1 retrogene
retro_mmus_111,
Otolemur garnettii ENSOGAG00000011349 ortholog_one2one 1 retrogene
retro_ogar_2113,
Pteropus vampyrus ENSPVAG00000007982 ortholog_one2one 1 retrogene
retro_pvam_1356,
Tupaia belangeri ENSTBEG00000001566 ortholog_one2one 1 retrogene
retro_tbel_3644,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_88 75.51 90.10
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Download FASTA sequences of all ENSSSCG00000006388 retrocopies