Parental gene: | THOC3, ENSCJAG00000006495 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 2:61536436..61546665(-) |
>ENSCJAG00000006495
ATGGCGGTGCCCACTGCACCCATGGGGCCCTCGGCATTGGGCCAGACCGGCCCCGGCTCGATGGCCTCGTGGTGCTCAGT
GAGCAGCGGCCCGTCGCGCTACGTGCTTGGGATGCAGGAGCTGTTCCGGGGCCACAGCAAGACGCGCGAGTTCTTGGCGC
ATAGCGCCAAGGTGCACTCGGTGGCCTGGAGCTGCGACGGGCGTCGCCTAGCTTCGGGGTCCTTCGACAAGACGGCCAGC
GTCTTCTTGCTGGAGAAGGACCGGTTGGTCAAAGAAAATAATTATCGGGGACATGGAGATAGTGTGGACCAGCTTTGTTG
GCATCCAAGTAATCCTGACCTATTTGTTACGGCATCTGGAGATAAAACCATTCGCATCTGGGATGTGAGGACTACAAAAT
GCATTGCCACTGTGAACACTAAAGGGGAGAACATTAATATCTGCTGGAGTCCTGATGGGCAGACCATTGCTGTAGGCAAC
AAGGATGATGTGGTGACTTTCATCGATGCCAAGACACACCGTTCCAAAGCAGAAGAGCAGTTCAAGTTTGAGGTCAATGA
AATCTCCTGGAACAATGACAATAACATGTTCTTCCTGACAAACGGCAATGGTTGTATCAACATCCTCAGTTACCCAGAAC
TGAAGCCTGTGCAGTCCATCAACGCCCATCCTTCCAACTGCATCTGTATCAAGTTTGACCCCATGGGGAAGTACTTTGCC
ACAGGAAGTGCAGATGCTTTGGTTAGCCTCTGGGATGTGGACGAGTTAGTGTGTGTTCGGTGCTTTTCCAGGCTGGATTG
GCCTGTAAGGACTGTCAGTTTCAGCCACGATGGGAAAATGCTGGCGTCAGCATCGGAAGATCATTTTATTGACATTGCTG
AAGTGGAGACAGGGGACAAGCTATGGGAGGTACAGTGTGAGTCTCCGACCTTCACCGTGGCGTGGCACCCCAAAAGGCCT
CTGCTGGCATTTGCCTGTGATGACAAAGATGGCAAATATGACAGTAGCCGGGAAGCTGGAACTGTGAAGCTGTTTGGGCT
TCCTAATGATTCTTGA
ATGGCGGTGCCCACTGCACCCATGGGGCCCTCGGCATTGGGCCAGACCGGCCCCGGCTCGATGGCCTCGTGGTGCTCAGT
GAGCAGCGGCCCGTCGCGCTACGTGCTTGGGATGCAGGAGCTGTTCCGGGGCCACAGCAAGACGCGCGAGTTCTTGGCGC
ATAGCGCCAAGGTGCACTCGGTGGCCTGGAGCTGCGACGGGCGTCGCCTAGCTTCGGGGTCCTTCGACAAGACGGCCAGC
GTCTTCTTGCTGGAGAAGGACCGGTTGGTCAAAGAAAATAATTATCGGGGACATGGAGATAGTGTGGACCAGCTTTGTTG
GCATCCAAGTAATCCTGACCTATTTGTTACGGCATCTGGAGATAAAACCATTCGCATCTGGGATGTGAGGACTACAAAAT
GCATTGCCACTGTGAACACTAAAGGGGAGAACATTAATATCTGCTGGAGTCCTGATGGGCAGACCATTGCTGTAGGCAAC
AAGGATGATGTGGTGACTTTCATCGATGCCAAGACACACCGTTCCAAAGCAGAAGAGCAGTTCAAGTTTGAGGTCAATGA
AATCTCCTGGAACAATGACAATAACATGTTCTTCCTGACAAACGGCAATGGTTGTATCAACATCCTCAGTTACCCAGAAC
TGAAGCCTGTGCAGTCCATCAACGCCCATCCTTCCAACTGCATCTGTATCAAGTTTGACCCCATGGGGAAGTACTTTGCC
ACAGGAAGTGCAGATGCTTTGGTTAGCCTCTGGGATGTGGACGAGTTAGTGTGTGTTCGGTGCTTTTCCAGGCTGGATTG
GCCTGTAAGGACTGTCAGTTTCAGCCACGATGGGAAAATGCTGGCGTCAGCATCGGAAGATCATTTTATTGACATTGCTG
AAGTGGAGACAGGGGACAAGCTATGGGAGGTACAGTGTGAGTCTCCGACCTTCACCGTGGCGTGGCACCCCAAAAGGCCT
CTGCTGGCATTTGCCTGTGATGACAAAGATGGCAAATATGACAGTAGCCGGGAAGCTGGAACTGTGAAGCTGTTTGGGCT
TCCTAATGATTCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 5 .88 RPM |
| SRP051959_skeletal_muscle | 5 .92 RPM |
| SRP051959_lymph_node | 5 .30 RPM |
| SRP051959_lung | 5 .53 RPM |
| SRP051959_liver | 10 .18 RPM |
| SRP051959_kidney | 7 .81 RPM |
| SRP051959_heart | 5 .70 RPM |
| SRP051959_colon | 7 .17 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Macropus eugenii | ENSMEUG00000001068 | possible_ortholog | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000005339 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000025872 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003503 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000010757 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1571 | 94.89 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3072 | 94.32 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006495 retrocopies