RetrogeneDB ID: retro_meug_19

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold60330:5623..6601(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000013439
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000001068
• Aliases: None
• Description: None

Sequence

>retro_meug_19
GGACCCTCGGCCTATGTGTCTGAGATGCGGGAGCAGTTTCAGGGCCATGGCAAGACAGGGGAGTACCAGGCACACACGGC
CAAGGTATCCTCGGTCGCCTGGAGCTGTGATGGGGCTCGGCTGGCATCGGGCTCCCTCGATAGGACAGCCAACGTCTTCC
TCCTGGAGCAAAACTGCCTGATGAAGGAATTCACCTACCATGGCCATGCAAACTGTATTGAGAAGCTATGCTGGCACCCC
AGCAACCCGTACCTCTTCGTTACGGCCTCAGGGGACAGGAGCATTCGCATTTGGGATGTGCGCAAAAGGAAGTGTGTGGG
CACCACCAGAACCAAAGGGGAGAATACGAACATTTGTTGGAGTCCTGATGGCCGCGCCATTGCAGTGGGGAACAGAAGAG
GTCTAGTCACCTTCGTCGATGCTCGCACTCACCGGACCACGGCAGAGGAGAACTTTAAGCAAGGGGTCAATGAGATAGCC
TGGAATAATGATAACACGCAGTTCTTCCTTACCAATGACAACGGGTGGATCAGTATTCTCAGTTACCCGGACTTACAGCC
TGTGCAGTCACTCAATGCCCATTCTTCTAACTGCATCAGCATCAAGTTTGATCCAACAGGCACGTATTTTGCCACGGGAA
GTGCCGATTCCTTGGTGAGCCTTTGGGATCTTAATGAGTTGGTGTGTGTGAGGTGCCTCTCCAGGCTGGATTGGCCTGTG
ACAGCCCTCAGTTTCAGCCATGATGGGAAAATGATTGCATCTGCATCTGAGGATCATTTCATCGATATTGCTGAAGTGGA
GACAGGAGACAGAATTTGGGAGATACAGGGTCAGTCTCCAACTTTGACTGTGGCCTGGCATCCCAAATTGCCACTGCTAG
CTTTTTCCTGTGACGACAAAAAAGATCAACTAGAAGTTCATGGGGAAGCGGGAACTGTGAAACTGTTTGGCTTTCCTCTT
GGCTCAAAAGGAAATTAA

Alignment

ORF - retro_meug_19 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.7 %
• Parental protein coverage: 90.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSRYVAGMQEVFRSHSKTREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFLLEKDRLVKENNYRGHGD
          PS.YV..M.E.F..H.KT.E..AH.AKV.SVAWSCDG.RLASGS.D.TA.VFLLE...L.KE..Y.GH..
Retrocopy PSAYVSEMREQFQGHGKTGEYQAHTAKVSSVAWSCDGARLASGSLDRTANVFLLEQNCLMKEFTYHGHAN

Parental  SVDQLCWHPSNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICWSPDGQTIAVGNKDDVVTFIDA
          ....LCWHPSNP.LFVTASGD..IRIWDVR..KC..T..TKGEN.NICWSPDG..IAVGN....VTF.DA
Retrocopy CIEKLCWHPSNPYLFVTASGDRSIRIWDVRKRKCVGTTRTKGENTNICWSPDGRAIAVGNRRGLVTFVDA

Parental  KTHRSKAEEQFRFEVNEISWNNDNNMFFLTNGNGCINILSYPELKPVQSINAHPSNCICIKFDPTGKYFA
          .THR..AEE.F...VNEI.WNNDN..FFLTN.NG.I.ILSYP.L.PVQS.NAH.SNCI.IKFDPTG.YFA
Retrocopy RTHRTTAEENFKQGVNEIAWNNDNTQFFLTNDNGWISILSYPDLQPVQSLNAHSSNCISIKFDPTGTYFA

Parental  TGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCESPT
          TGSAD.LVSLWD..ELVCVRC.SRLDWPV..LSFSHDGKM.ASASEDHFIDIAEVETGD..WE.Q..SPT
Retrocopy TGSADSLVSLWDLNELVCVRCLSRLDWPVTALSFSHDGKMIASASEDHFIDIAEVETGDRIWEIQGQSPT

Parental  FTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLP
          .TVAWHPK.PLLAF.CDDK........EAGTVKLFG.P
Retrocopy LTVAWHPKLPLLAFSCDDKKDQLEVHGEAGTVKLFGFP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_19 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_19 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006495	2 retrocopies	retro_cjac_1571, retro_cjac_3072,
Macropus eugenii	ENSMEUG00000001068	2 retrocopies	retro_meug_1061, retro_meug_19 ,
Monodelphis domestica	ENSMODG00000005339	1 retrocopy	retro_mdom_164,
Mus musculus	ENSMUSG00000025872	2 retrocopies	retro_mmus_1821, retro_mmus_441,
Otolemur garnettii	ENSOGAG00000003503	1 retrocopy	retro_ogar_3005,
Sarcophilus harrisii	ENSSHAG00000010757	1 retrocopy	retro_shar_4,