Parental gene:

ETF1, ENSCJAG00000006776

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:35393057..35428779(-)


>ENSCJAG00000006776
ATGAAAAAGGATGTGCGTAATTGTACTGAAGGCCGAGTTCACAGCAATGGCACCAGCATGATATCCTTGATCATTCCTCC
CAAAGACCAGATTTCACGAGTGGCAAAAATGTTAGCAGATGAGTTTGGAACTGCATCTAACATTAAGTCACGAGTAAACC
GCCTTTCAGTCCTGGGAGCCATTACATCTGTACAACAAAGACTCAAACTTTATAACAAAGTACCTCCAAATGGTCTGGTT
GTTTACTGTGGAACAATTGTAACAGAAGAAGGAAAGGAAAAGAAAGTCAACATTGACTTTGAACCTTTCAAACCAATTAA
TACATCATTGTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAGCACTACTTTCAGATGATAGCAAGTTTGGAT
TCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAACACAAGAGAAGTCCTGCACAAATTCACTGTG
GATCTCCCAAAGAAACACGGTAGAGGAGGTCAGTCAGCCTTGCGTTTTGCCCGTTTAAGAATGGAAAAGCGACATAACTA
TGTTCGGAAAGTAGCAGAAACTGCTGTGCAGCTGTTTATTTCTGGGGACAAAGTGAATGTGGCTGGTCTAGTTTTAGCTG
GATCTGCTGACTTTAAAACTGAACTAAGTCAATCTGATATGTTTGATCAGAGGTTACAATCGAAAGTTTTAAAATTAGTT
GATATATCCTATGGTGGTGAAAATGGATTCAACCAAGCTATTGAGTTATCTACTGAAGTCCTCTCCAACGTGAAATTCAT
TCAAGAGAAGAAATTAATAGGACGATACTTTGATGAAATCAGCCAGGACACGGGCAAATACTGTTTTGGCGTTGAAGATA
CACTAAAGGCTTTGGAAATGGGAGCTGTAGAAATTCTAATAGTCTATGAAAATCTGGATATAATGAGATATGTTCTTCAT
TGCCAAGGCACAGAAGAGGAGAAAATTCTCTATCTAACTCCAGAGCAAGAAAAGGATAAATCTCATTTCACAGACAAAGA
GACCGGACAGGAACATGAGCTTATTGAGAGCATGCCCCTGTTGGAATGGTTTGCTAACAACTATAAAAAATTTGGAGCTA
CGTTGGAAATTGTCACAGATAAATCACAAGAAGGGTCTCAGTTTGTGAAAGGCTTTGGTGGAATTGGAGGTATCTTGCGG
TACCGAGTAGATTTCCAGGGAATGGAATACCAAGGAGGAGACGATGAATTTTTTGACCTTGATGACTACTAG

Library Parental gene expression (RPM)
SRP051959_colon 60 .99 RPM
SRP051959_heart 47 .31 RPM
SRP051959_kidney 74 .10 RPM
SRP051959_liver 66 .71 RPM
SRP051959_lung 58 .03 RPM
SRP051959_lymph_node 42 .42 RPM
SRP051959_skeletal_muscle 92 .35 RPM
SRP051959_spleen 64 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001282 ortholog_one2many 1 retrogene
retro_cfam_99,
Dasypus novemcinctus ENSDNOG00000010830 ortholog_one2one 3 retrogenes
retro_dnov_1925, retro_dnov_2504, retro_dnov_610,
Equus caballus ENSECAG00000013041 ortholog_one2one 1 retrogene
retro_ecab_740,
Echinops telfairi ENSETEG00000007362 ortholog_one2one 2 retrogenes
retro_etel_1237, retro_etel_1400,
Gorilla gorilla ENSGGOG00000000657 ortholog_one2one 4 retrogenes
retro_ggor_2326, retro_ggor_2561, retro_ggor_2562, retro_ggor_2919,
Macaca mulatta ENSMMUG00000005871 possible_ortholog 2 retrogenes
retro_mmul_1658, retro_mmul_718,
Mustela putorius furo ENSMPUG00000009338 ortholog_one2one 1 retrogene
retro_mputfur_1448,
Oryctolagus cuniculus ENSOCUG00000006650 ortholog_one2many 3 retrogenes
retro_ocun_1188, retro_ocun_1614, retro_ocun_462,
Rattus norvegicus ENSRNOG00000019450 ortholog_one2one 1 retrogene
retro_rnor_2935,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2316 87.39 58.17
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2. retro_cjac_4133 93.14 96.45
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Download FASTA sequences of all ENSCJAG00000006776 retrocopies