Parental gene:

ETF1, ENSDNOG00000010830

Aliases:None
Description:eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:3477]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_2394:34726..62171(-)


>ENSDNOG00000010830
ACTGCGGACAGCCCCAGAGTTGCCCACAGGAGCGTGGAGCTCAAGAGGCCCAGCAAGAGCTGGGAAGCACGCGGCAATGG
CACAAGCATGATTTCGTTGATCATTCCTCCCAAAGACCAGATTTCACGAGTGGCAAAAATGTTAGCAGATGAGTTTGGAA
CTGCGTCTAACATTAAGTCACGAGTAAACCGCCTTTCAGTCCTGGGAGCCATTACATCTGTACAACAAAGACTCAAACTT
TATAACAAAGTACCTCCAAATGGTCTGGTTGTTTACTGTGGAACAATTGTAACAGAAGAAGGAAAGGAAAAGAAAGTCAA
CATTGACTTTGAGCCTTTCAAACCAATTAATACGTCATTGTATTTGTGTGACAACAAATTCCATACAGAGGCTCTTACAG
CGCTACTTTCAGATGATAGCAAGTTTGGCTTCATTGTAATAGATGGTAGTGGTGCACTTTTTGGCACACTCCAAGGAAAC
ACAAGAGAAGTCCTGCACAAATTCACTGTGGATCTCCCAAAAAAACATGGTAGAGGAGGTCAGTCTGCCTTGCGTTTTGC
CCGTTTAAGAATGGAAAAACGACATAACTATGTTCGGAAAGTAGCTGAGACTGCTGTGCAGCTGTTTATTTCTGGGGACA
AAGTGAATGTGGCTGGTCTCGTTTTAGCTGGATCAGCTGACTTTAAAACTGAATTAAGTCAATCTGATATGTTTGATCAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGATATTTTATCAGCCAGGACACGGGCA
AGTACTGTTTTGGAGTTGGAGATACACTAAAGGCTTTGGAGATGGCTGTAGAGATTCTAATAGTCTATGAAAATCTGGAT
ATAATGAGATATGTTCTTCATTGCCAAGGCACAGAAGAGGAGAAGATTCTGTATCTAACCCCAGAACAAGAGAAGGATAA
ATCTCATTTCACAGACAAAGAGACAGGACAGGAACATGAATTGATTGAGAGCATGCCCCTGCTGGAATGGTTTGCTAACA
ACTATAAAAAATTTGGAGCTACATTGGAAATTGTCACAGATAAGTCACAAGAAGGATCCCAGTTTGTGAAAGGATTTGGT
GGAATTGGAGGTATCTTGCGGTACCGAGTAGATTTCCAGGGAATGGAATACCAAGGAGGAGACGATGAATTTTTTGACCT
TGATGACTACTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 22 .75 RPM
SRP012922_cerebellum 12 .23 RPM
SRP012922_heart 9 .28 RPM
SRP012922_kidney 9 .31 RPM
SRP012922_liver 15 .95 RPM
SRP012922_lung 18 .17 RPM
SRP012922_quadricep_muscle 23 .37 RPM
SRP012922_spleen 19 .92 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001282 ortholog_one2many 1 retrogene
retro_cfam_99,
Callithrix jacchus ENSCJAG00000006776 ortholog_one2one 2 retrogenes
retro_cjac_2316, retro_cjac_4133,
Equus caballus ENSECAG00000013041 ortholog_one2one 1 retrogene
retro_ecab_740,
Echinops telfairi ENSETEG00000007362 ortholog_one2one 2 retrogenes
retro_etel_1237, retro_etel_1400,
Gorilla gorilla ENSGGOG00000000657 ortholog_one2one 4 retrogenes
retro_ggor_2326, retro_ggor_2561, retro_ggor_2562, retro_ggor_2919,
Macaca mulatta ENSMMUG00000005871 ortholog_one2many 2 retrogenes
retro_mmul_1658, retro_mmul_718,
Mustela putorius furo ENSMPUG00000009338 ortholog_one2one 1 retrogene
retro_mputfur_1448,
Oryctolagus cuniculus ENSOCUG00000006650 ortholog_one2many 3 retrogenes
retro_ocun_1188, retro_ocun_1614, retro_ocun_462,
Rattus norvegicus ENSRNOG00000019450 ortholog_one2one 1 retrogene
retro_rnor_2935,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_610 73.53 55.12
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2. retro_dnov_1925 70.09 52.09
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3. retro_dnov_2504 82.65 50.23
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Download FASTA sequences of all ENSDNOG00000010830 retrocopies