Parental gene:

ENSCJAG00000007018

Aliases:None
Description:Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6YJ68]
Organism:Marmoset (Callithrix jacchus)
Coordinates:14:43442212..43461377(-)


>ENSCJAG00000007018
ATGTCCGAACCAATCAGAGTCCTTGTGACTGGAGCAGCTGGTCAGATTGCATATTCACTGCTGTATAGTATTGGAAATGG
ATCTGTCTTTGGTAAAGACCAGCCTATAATTCTTGTGCTGTTGGATATCACCCCCATGATGGGTGTCCTGGATGGTGTCC
TAATGGAACTTCAAGACTGTGCCCTTCCCCTCCTGAAAGATGTCATCGCAACAGATAAAGAAGAGGTTGCCTTCAAAGAC
CTGGATGTGGCCATTCTCGTAGGCTCCATGCCAAGAAGGGAGGGCATGGAGAGAAAAGATTTACTGAAAGCAAACGTGAA
AATCTTCAAATCCCAGGGTGCAGCCTTGGATAAATACGCAAAGAAGTCAGTTAAGGTTATTGTTGTGGGTAATCCAGCCA
ATACCAACTGCCTGACTGCCTCCAAGTCAGCTCCATCCATCCCCAAGGAGAACTTCAGTTGCTTGACCCGTTTGGATCAC
AACCGAGCTAAAGCTCAAATTGCTCTTAAACTTGGTGTGACTGCTAATGATGTAAAGAATGTCATTATCTGGGGAAACCA
TTCCTCAACTCAGTATCCAGATGTCAACCATGCCAAGGTGAAATTGCAAGGAAAGGAAGTTGGTGTTTATGAAGCTCTGA
AAGATGACAACTGGCTCAAGGGAGAATTTGTCACAACTGTGCAGCAGCGTGGCGCTGCTGTCATCAAGGCTCGAAAACTA
TCCAGTGCAATGTCTGCTGCAAAGATCTGTGACCATGTCAGGGACATCTGGTTTGGACCCCAGAGAGGAGAGTTTGTGTC
CATGGGTGTTATCTCTGATGGCAATTCCTATGGTGTTCCTGATGATCTGCTCTACTCATTCCCTGTTGTAATCAAGAATA
AGACCTGGAAGTTCGTTGAAGGTCTCCCTGTTAATGATTTCTCACGTGAGAAGATGGATCTTACTGCAAAGGAGCTGACA
GAAGAAAAAGAAACTGCTTTTGAATTTCTTTCCTCTGCCTGA

Library Parental gene expression (RPM)
SRP051959_colon 51 .43 RPM
SRP051959_heart 198 .01 RPM
SRP051959_kidney 89 .12 RPM
SRP051959_liver 68 .53 RPM
SRP051959_lung 21 .81 RPM
SRP051959_lymph_node 26 .09 RPM
SRP051959_skeletal_muscle 157 .47 RPM
SRP051959_spleen 30 .57 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019295 ortholog_one2many 1 retrogene
retro_btau_466,
Choloepus hoffmanni ENSCHOG00000007281 ortholog_one2many 5 retrogenes
retro_chof_1260, retro_chof_1513, retro_chof_1892, retro_chof_2001, retro_chof_90,
Dasypus novemcinctus ENSDNOG00000013329 ortholog_one2many 2 retrogenes
retro_dnov_109, retro_dnov_2562,
Homo sapiens ENSG00000014641 ortholog_one2many 1 retrogene
retro_hsap_3426,
Gorilla gorilla ENSGGOG00000007085 ortholog_one2many 1 retrogene
retro_ggor_2316,
Loxodonta africana ENSLAFG00000016504 ortholog_one2many 2 retrogenes
retro_lafr_1134, retro_lafr_972,
Macaca mulatta ENSMMUG00000006163 ortholog_one2many 2 retrogenes
retro_mmul_1750, retro_mmul_2496,
Nomascus leucogenys ENSNLEG00000009823 ortholog_one2many 1 retrogene
retro_nleu_1363,
Otolemur garnettii ENSOGAG00000014487 ortholog_many2many 1 retrogene
retro_ogar_741,
Pongo abelii ENSPPYG00000012373 ortholog_one2many 1 retrogene
retro_pabe_2839,
Pan troglodytes ENSPTRG00000011974 ortholog_one2many 1 retrogene
retro_ptro_2326,
Sorex araneus ENSSARG00000007690 ortholog_one2many 1 retrogene
retro_sara_361,
Sus scrofa ENSSSCG00000025751 ortholog_many2many 1 retrogene
retro_sscr_779,
Tarsius syrichta ENSTSYG00000001215 ortholog_one2many 2 retrogenes
retro_tsyr_1790, retro_tsyr_190,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_282 97.33 67.57
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2. retro_cjac_1848 75.44 84.34
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3. retro_cjac_2407 65.17 60.06
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4. retro_cjac_2418 66.17 60.24
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Download FASTA sequences of all ENSCJAG00000007018 retrocopies