Parental gene:

MDH1, ENSPTRG00000011974

Aliases:None
Description:Pan troglodytes malate dehydrogenase 1, NAD (soluble) (MDH1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001243069]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:64454113..64472689(+)


>ENSPTRG00000011974
ATGTCTGAACCAATCAGAGTCCTTGTGACTGGAGCAGCTGGTCAAATTGCATATTCACTGCTGTACAGTATTGGAAATGG
ATCTGTCTTTGGTAAAGATCAGCCTATAATTCTTGTGCTGTTGGATATCACCCCCATGATGGGTGTCCTGGACGGTGTCC
TAATGGAACTGCAAGACTGTGCCCTTCCCCTCCTGAAAGATGTCATCGCAACAGATAAAGAAGAGGTTGCCTTCAAAGAC
CTGGATGTGGCCATTCTTGTGGGCTCCATGCCAAGAAGGGAAGGCATGGAGAGAAAAGATTTACTGAAAGCAAATGTGAA
AATCTTCAAATCCCAGGGTGCAGCCTTAGATAAATACGCCAAGAAGTCAGTTAAGGTTATTGTTGTGGGTAATCCAGCCA
ATACCAACTGCCTGACTGCTTCCAAGTCGGCTCCATCCATCCCCAAGGAGAACTTCAGTTGCTTGACTCGTTTGGATCAC
AACCGAGCTAAAGCTCAAATTGCTCTTAAACTTGGTGTGACTGCTAATGATGTAAAGAATGTCATTATCTGGGGAAACCA
TTCCTCGACTCAGTATCCAGATGTCAACCATGCCAAGGTGAAATTGCAAGGAAAGGAAGTTGGTGTTTATGAAGCTCTGA
AAGATGACAGCTGGCTCAAGGGAGAATTTGTCACGACTGTGCAGCAGCGTGGTGCTGCTGTCATCAAGGCTCGAAAACTA
TCCAGTGCCATGTCTGCTGCAAAAGCCATCTGTGACCACGTCAGGGACATCTGGTTTGGAACCCCAGAGGGAGAGTTTGT
GTCCATGGGTGTTATCTCTGATGGCAACTCCTATGGTGTTCCTGATGATCTGCTCTACTCATTCCCTGTTGTAATCAAGA
ATAAGACCTGGAAGTTTGTTGAAGGTCTCCCTATTAATGATTTCTCACGTGAGAAGATGGATCTTACTGCAAAGGAACTG
ACAGAAGAAAAAGAAAGTGCTTTTGAATTTCTTTCCTCTGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 342 .63 RPM
SRP007412_cerebellum 153 .14 RPM
SRP007412_heart 585 .02 RPM
SRP007412_kidney 196 .98 RPM
SRP007412_liver 55 .75 RPM
SRP007412_testis 31 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019295 ortholog_one2one 1 retrogene
retro_btau_466,
Choloepus hoffmanni ENSCHOG00000007281 ortholog_one2one 5 retrogenes
retro_chof_1260, retro_chof_1513, retro_chof_1892, retro_chof_2001, retro_chof_90,
Callithrix jacchus ENSCJAG00000007018 ortholog_one2many 4 retrogenes
retro_cjac_1848, retro_cjac_2407, retro_cjac_2418, retro_cjac_282,
Dasypus novemcinctus ENSDNOG00000013329 ortholog_one2one 2 retrogenes
retro_dnov_109, retro_dnov_2562,
Homo sapiens ENSG00000014641 ortholog_one2one 1 retrogene
retro_hsap_3426,
Gorilla gorilla ENSGGOG00000007085 ortholog_one2one 1 retrogene
retro_ggor_2316,
Loxodonta africana ENSLAFG00000016504 ortholog_one2one 2 retrogenes
retro_lafr_1134, retro_lafr_972,
Macaca mulatta ENSMMUG00000006163 ortholog_one2one 2 retrogenes
retro_mmul_1750, retro_mmul_2496,
Nomascus leucogenys ENSNLEG00000009823 ortholog_one2one 1 retrogene
retro_nleu_1363,
Otolemur garnettii ENSOGAG00000014487 ortholog_one2many 1 retrogene
retro_ogar_741,
Pongo abelii ENSPPYG00000012373 ortholog_one2one 1 retrogene
retro_pabe_2839,
Sorex araneus ENSSARG00000007690 ortholog_one2one 1 retrogene
retro_sara_361,
Sus scrofa ENSSSCG00000025751 ortholog_one2many 1 retrogene
retro_sscr_779,
Tarsius syrichta ENSTSYG00000001215 ortholog_one2one 2 retrogenes
retro_tsyr_1790, retro_tsyr_190,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2326 68.26 68.26
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000011974 retrocopies