Parental gene: | LAPTM4A, ENSCJAG00000007433 |
| Aliases: | None |
| Description: | lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 14:88542318..88561517(+) |
>ENSCJAG00000007433
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTCCGCAC
CGGGACCATCATCCTGGGGACCTGGTACATGGTGGTAAACCTATTGATGGCAATTTTGCTGACTGTGGAAGTGACTCATC
CAAACTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATCGGTAATTACTATTCATCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCTGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTTTATGGAGCAATTTCTTATCAAGTGGG
CTGGCTGATTCCATTCTTCTGTTACCGGCTTTTTGACTTCGTCCTCAGTTGCCTGGTTGCTATTAGTTCTCTCACCTATT
TGCCGAGAATCAAAGAATATCTGGATCAGTTGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGC
CTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGGCTTATCTAATCAACTGTGTTTGGAACTGCTA
TAAATACATCAACAACCGAAACGTGCCAGAGATTGCTGTGTATCCTGCCTTTGAAGCGCCTCCTCAGTATGTTTTGCCAA
CTTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGA
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTCCGCAC
CGGGACCATCATCCTGGGGACCTGGTACATGGTGGTAAACCTATTGATGGCAATTTTGCTGACTGTGGAAGTGACTCATC
CAAACTCCATGCCAGCTGTCAACATTCAGTATGAAGTCATCGGTAATTACTATTCATCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCTGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTTTATGGAGCAATTTCTTATCAAGTGGG
CTGGCTGATTCCATTCTTCTGTTACCGGCTTTTTGACTTCGTCCTCAGTTGCCTGGTTGCTATTAGTTCTCTCACCTATT
TGCCGAGAATCAAAGAATATCTGGATCAGTTGCCTGATTTTCCCTACAAAGATGACCTCCTGGCCTTGGACTCCAGCTGC
CTCCTGTTCATTGTTCTTGTGTTCTTTGCCTTATTCATCATTTTTAAGGCTTATCTAATCAACTGTGTTTGGAACTGCTA
TAAATACATCAACAACCGAAACGTGCCAGAGATTGCTGTGTATCCTGCCTTTGAAGCGCCTCCTCAGTATGTTTTGCCAA
CTTATGAAATGGCCGTGAAAATGCCTGAAAAAGAACCACCACCTCCTTACTTACCTGCCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 95 .40 RPM |
| SRP051959_skeletal_muscle | 40 .44 RPM |
| SRP051959_lymph_node | 50 .27 RPM |
| SRP051959_lung | 65 .13 RPM |
| SRP051959_liver | 61 .99 RPM |
| SRP051959_kidney | 59 .73 RPM |
| SRP051959_heart | 59 .60 RPM |
| SRP051959_colon | 53 .43 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000020894 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000011200 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000031235 | within_species_paralog | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000002569 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000013714 | ortholog_one2one | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000012401 | ortholog_one2one | 2 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002909 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_839 | 98.28 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007433 retrocopies