Parental gene:

LAPTM4A, ENSBTAG00000020894

Aliases:None
Description:Lysosomal-associated transmembrane protein 4A [Source:UniProtKB/Swiss-Prot;Acc:Q6QRN8]
Organism:Cow (Bos taurus)
Coordinates:11:78862494..78880461(+)


>ENSBTAG00000020894
ATGGTGTCCATGACTTTCAAGCGGAGCCGCAGCGACCGGTTCTACAGCACCCGGTGCTGCGGCTGTTGCCATGTTCGCAC
CGGGACGATCATCCTGGGGACCTGGTACATGGTGGTCAACCTGTTGATGGCAATTCTGCTGACTGTGGAGGTAACACACC
CAAACTCAATGCCAGCTGTCAACATTCAGTATGAAGTCATTGGCAATTACTATTCGTCTGAGAGAATGGCTGATAATGCC
TGTGTTCTTTTTGCCGTCTCTGTTCTTATGTTTATAATCAGTTCAATGCTGGTATACGGAGCAATTTCTTATCAAGTGGG
TTGGCTGATTCCGTTCTTCTGTTACCGGCTTTTTGACTTTGTTCTCAGCTGCCTGGTTGCTATCAGTTCTCTGACTTACT
TGCCAAGAATCAAAGAATATCTGGATCAGTTACCTGATTTTCCCTATAAAGATGACCTCCTGGCATTGGACTCCAGCTGC
CTCTTGTTCATTGTTCTTGTGTTCTTTGCCTTGTTCATCATTTTTAAGGCTTATCTGATTAACTGTGTTTGGAACTGTTA
TAAATACATCAACAACAGAAACATGCCGGAGATTGCTGTGTACCCAGCCTTTGAGGCGCCTCCACAGTATGTTTTGCCAA
CCTATGAAATGGCAGTGAAGATGCCTGAGAAAGAACCACCACCTCCTTACATACCTGCCTGA

Library Parental gene expression (RPM)
ERP005899_liver 129 .63 RPM
ERP005899_muscle 101 .83 RPM
SRP017611_brain 85 .24 RPM
SRP017611_kidney 248 .59 RPM
SRP017611_liver 110 .54 RPM
SRP030211_testis 230 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000016959 within_species_paralog 3 retrogenes
retro_btau_1493, retro_btau_1759, retro_btau_786,
Choloepus hoffmanni ENSCHOG00000011200 ortholog_one2one 2 retrogenes
retro_chof_1916, retro_chof_2320,
Callithrix jacchus ENSCJAG00000007433 ortholog_one2one 1 retrogene
retro_cjac_839,
Echinops telfairi ENSETEG00000002569 ortholog_one2one 1 retrogene
retro_etel_591,
Mustela putorius furo ENSMPUG00000013714 ortholog_one2one 1 retrogene
retro_mputfur_657,
Ochotona princeps ENSOPRG00000012401 ortholog_one2one 2 retrogenes
retro_opri_356, retro_opri_474,
Pteropus vampyrus ENSPVAG00000002909 ortholog_one2one 3 retrogenes
retro_pvam_779, retro_pvam_847, retro_pvam_873,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_575 81.50 72.96
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Download FASTA sequences of all ENSBTAG00000020894 retrocopies