Parental gene: | PABPN1, ENSCJAG00000007960 |
| Aliases: | None |
| Description: | poly(A) binding protein, nuclear 1 [Source:HGNC Symbol;Acc:8565] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:47374781..47380751(+) |
>ENSCJAG00000007960
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGG
AACTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCGAGCCTGAAGAGGAGCCGCCCCGGCCCCGCGCCCCC
CCGGGAGCTCCGGGCCCTGGGCCTGGTTCGGGAGCCCCCGGCAGTCAAGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGG
TGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTG
AGAAGCTAAAGGAACTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCTCCAGGCAATGCTGGCCCAGTGATC
ATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGA
GCTGGAAGCTCACTTTCATGGCTGTGGTTCAGTCAACCGTGTTACCATACTCTGTGACAAATTTAGTGGCCATCCCAAAG
GGTTTGCATATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGG
CAGATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTTCCACGAGCCCGCTACCG
CGCACGGACCACCAACTACAACAGTTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGCGTCTACA
GGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA
ATGGCGGCGGCGGCGGCGGCGGCAGCAGCAGCGGGGGCTGCGGGCGGTCGGGGCTCCGGGCCGGGGCGGCGGCGCCATCT
TGTGCCCGGGGCCGGTGGGGAGGCCGGGGAGGGGGCCCCGGGGGGCGCAGGGGACTACGGGAACGGCCTGGAGTCTGAGG
AACTGGAGCCTGAGGAGCTGCTGCTGGAGCCCGAGCCGGAGCCCGAGCCTGAAGAGGAGCCGCCCCGGCCCCGCGCCCCC
CCGGGAGCTCCGGGCCCTGGGCCTGGTTCGGGAGCCCCCGGCAGTCAAGAGGAGGAGGAGGAGCCGGGACTGGTCGAGGG
TGACCCGGGGGACGGCGCCATTGAGGACCCGGAGCTGGAAGCTATCAAAGCTCGAGTCAGGGAGATGGAGGAAGAAGCTG
AGAAGCTAAAGGAACTACAGAACGAGGTAGAGAAGCAGATGAATATGAGTCCACCTCCAGGCAATGCTGGCCCAGTGATC
ATGTCCATTGAGGAGAAGATGGAGGCTGATGCCCGTTCCATCTATGTTGGCAATGTGGACTATGGTGCAACAGCAGAAGA
GCTGGAAGCTCACTTTCATGGCTGTGGTTCAGTCAACCGTGTTACCATACTCTGTGACAAATTTAGTGGCCATCCCAAAG
GGTTTGCATATATAGAGTTCTCAGACAAAGAGTCAGTGAGGACTTCCTTGGCCTTAGATGAGTCCCTATTTAGAGGAAGG
CAGATCAAGGTGATCCCAAAACGAACCAACAGACCAGGCATCAGCACAACAGACCGGGGTTTTCCACGAGCCCGCTACCG
CGCACGGACCACCAACTACAACAGTTCCCGCTCTCGATTCTACAGTGGTTTTAACAGCAGGCCCCGGGGTCGCGTCTACA
GGGGCCGGGCTAGAGCGACATCATGGTATTCCCCTTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 36 .64 RPM |
| SRP051959_skeletal_muscle | 20 .05 RPM |
| SRP051959_lymph_node | 38 .42 RPM |
| SRP051959_lung | 38 .26 RPM |
| SRP051959_liver | 25 .93 RPM |
| SRP051959_kidney | 56 .46 RPM |
| SRP051959_heart | 32 .03 RPM |
| SRP051959_colon | 16 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006884 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000002873 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000100836 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000022683 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000006775 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000022194 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015009 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008710 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000005663 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000006168 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000002023 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1263 | 80.99 | 96.59 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2291 | 84.70 | 68.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_3278 | 87.45 | 79.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3836 | 87.83 | 98.37 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000007960 retrocopies